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Illumina / hap.py

Haplotype VCF comparison tools
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output_vcf #162

Open Shreya-droid opened 1 year ago

Shreya-droid commented 1 year ago

Where this variable is defined "output_vcf" in hap.py script ??

b-math commented 1 year ago

Hi, I'm not sure I understand your question correctly, but if you want to export a vcf containing all variants, you can append the -V (uppercase) flag to your command.

Best regards, Barbara