Illumina / hap.py

Haplotype VCF comparison tools
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CMake Error at CMakeLists.txt:32 (message): Building external dependencies has failed #171

Closed oranges7 closed 1 year ago

oranges7 commented 1 year ago

(base) [gyc@six170sever hap.py-master]$ python2 install.py /home/gyc/hap/ cd /tmp/buildAInSK4 && /home/gyc/hap/hap.py-master/configure.sh Release auto /home/gyc/hap Build from /home/gyc/hap/hap.py-master, type is Release / installation directory: /home/gyc/hap Using system Boost CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake.

Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions.

-- The C compiler identification is GNU 4.8.5 -- The CXX compiler identification is GNU 4.8.5 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- using compiler: g++ version 4.8.5 CMake Error at CMakeLists.txt:32 (message): Building external dependencies has failed

-- Configuring incomplete, errors occurred! See also "/tmp/buildAInSK4/CMakeFiles/CMakeOutput.log". cd /tmp/buildAInSK4 && make -j112 make: *** No targets specified and no makefile found. Stop. Traceback (most recent call last): File "install.py", line 298, in main() File "install.py", line 283, in main build_haplotypes(source_dir, build_dir, args) File "install.py", line 157, in build_haplotypes subprocess.check_call(to_run, shell=True) File "/usr/lib64/python2.7/subprocess.py", line 542, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command 'cd /tmp/buildAInSK4 && make -j112' returned non-zero exit status 2

I hope someone can answer my questions.