ezralanglois
commented
2 years ago AttributeError: 'str' object has no attribute 'index_metric_set'
This error says that the variable run_folder points to a string and not a run_metrics object. You would want to use run_metrics in the first example not run_folder, e.g.
assert(run_metrics.index_metric_set().size()>0)For this example:
run_folder = run_metrics.read(run_folder, valid_to_load)
run_metrics.read returns None, so again you need
assert(run_metrics.index_metric_set().size()>0)
lgwatgithub
I'm trying to run:
import os from interop import *
run_folder = r"I:\220214_M05961_0159_000000000-K7N86" print (run_folder + "\InterOp\IndexMetricsOut.bin ", os.path.exists(run_folder + "\InterOp\IndexMetricsOut.bin")) run_info = py_interop_run.info() run_info.read(run_folder) print("Number of cycles %d" % run_info.total_cycles())
names = py_interop_run.string_vector() py_interop_run.list_metric_type(names)
run_metrics = py_interop_run_metrics.run_metrics() valid_to_load = py_interop_run.uchar_vector(py_interop_run.MetricCount, 0) py_interop_run_metrics.list_index_metrics_to_load(valid_to_load) run_metrics.read(run_folder, valid_to_load) print (type(run_folder)) assert(run_folder.index_metric_set().size()>0)
and here is the output: I:\220214_M05961_0159_000000000-K7N86\InterOp\IndexMetricsOut.bin True Number of cycles 168 <class 'str'> Traceback (most recent call last): File "MiSeq.py", line 20, in
assert(run_folder.index_metric_set().size()>0)
AttributeError: 'str' object has no attribute 'index_metric_set'
I also tried with: run_folder = run_metrics.read(run_folder, valid_to_load)
and get:
I:\220214_M05961_0159_000000000-K7N86\InterOp\IndexMetricsOut.bin True Number of cycles 168 Traceback (most recent call last): File "MiSeq.py", line 19, in
assert(run_folder.index_metric_set().size()>0)
AttributeError: 'NoneType' object has no attribute 'index_metric_set'
Please explain what I am doing wrong.