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Illumina / interop

C++ Library to parse Illumina InterOp files

http://illumina.github.io/interop/index.html

GNU General Public License v3.0

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no result was returned #295

Closed daisyflemming closed 2 years ago

daisyflemming commented 2 years ago

Hello,

I am using Centos Linux v7. I downloaded the compressed folder for Linux and ran ./index-summary but I didn't get any result or errors

I checked that my run directory has RunInfo.xml and runParameters.xml InterOp/ has TileMetricsOut.bin

Any advice? Thanks

ezralanglois commented 2 years ago

Does it have <run_folder>/InterOp/IndexMetricsOut.bin?

daisyflemming commented 2 years ago

No, it doesn't. We have these only

/InterOp/ControlMetricsOut.bin /InterOp/CorrectedIntMetricsOut.bin /InterOp/ErrorMetricsOut.bin /InterOp/ExtractionMetricsOut.bin /InterOp/TileMetricsOut.bin

ezralanglois commented 2 years ago

This program requires both Index and Tile metrics. It should probably report an error that Index is missing, but it does not.

daisyflemming commented 2 years ago

Thanks I will check with illumina tech support how to generate IndexMetricsOut.bin. BTW, do you have an older module that does not require IndexMetricsOut.bin?

ezralanglois commented 2 years ago

No, that file contains all the important for the index summary.