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Illumina / interop

C++ Library to parse Illumina InterOp files
http://illumina.github.io/interop/index.html
GNU General Public License v3.0
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interop_summary command issue #306

Closed mcnairr2 closed 1 year ago

mcnairr2 commented 1 year ago

Having issue creating an interop summary file for a NextSeq run where the control software is v1.5 and the DRAGEN software is v3.10.

(base) -bash-4.2$ cd /data/SBI_Illumina_GA2_runs/NextSeq/230117_VL00138_100_AACHVV5M5/ (base) -bash-4.2$ interop_summary --csv=1 . > 230117NextSeq-interop_summary.csv No format found to parse ErrorMetricsOut.bin with version: 6 of 3 /opt/conda/conda-bld/illumina-interop_1618932334259/work/./interop/io/metric_stream.h::read_metrics (109)

ezralanglois commented 1 year ago

It looks like the latest version of InterOp should work.

  1. What version are you using?
  2. Assuming it is not 1.2.0, have you tried to upgrade to 1.2.0?
mcnairr2 commented 1 year ago

It looks like we are using v1.1.23. We have not tried to upgrade to v1.2.0, is it as simple as going in Linux and running the conda install? Would I need root access to run the install?

ezralanglois commented 1 year ago

I am not sure how you originally installed it. If it is available on conda, then someone else is packaging it there.

I cannot comment on whether you would need root either. That is a local system issue.