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Illumina / interop

C++ Library to parse Illumina InterOp files
http://illumina.github.io/interop/index.html
GNU General Public License v3.0
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plot_by_lane: density plot #324

Closed kohleman closed 1 year ago

kohleman commented 1 year ago

Hi, I am using plot_by_lane. I realized that it only can create plots for the cluster count. In the SAV, the default view is the density. Therefore I would like to generate exactly the same plot. How can I achieve this? Any hints? My naive try fails: ./plot_by_lane ../../data/iSeq100 --metric-name=Density | gnuplot The help only shows --metric-name[ClusterCount]: Metric to plot

Thanks Manuel

ezralanglois commented 1 year ago

https://github.com/Illumina/interop/blob/fe1a5ef2c113e58eadc6ddb9e7853861a33f9a44/interop/constants/enums.h#L52C24-L55

The metric name should Clusters. It will appear as density in the plot.

kohleman commented 1 year ago

Great, thanks for your quick answer