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Illumina / interop

C++ Library to parse Illumina InterOp files
http://illumina.github.io/interop/index.html
GNU General Public License v3.0
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Can I get all the index information #342

Closed Nitin123-4 closed 3 months ago

Nitin123-4 commented 3 months ago

Hi All,

Can I get all the index and reads generated information from InterOP folder?

Provided I don't have sample sheet there. I just want to know without sample sheet top 1000 indexes.

The idea is can we get the top 1000 index with reads information without running bcl2fastq or bcl-convert?

ezralanglois commented 3 months ago

That information is not written to a binary interop file. It is available in the reports of both programs, depending how they are configured

Nitin123-4 commented 3 months ago

Thanks for the quick response. It will be helpful if somehow we can get this information without running bcl2fastq or bcl-convert as it takes time to parse bcl files.

Thanks.

ezralanglois commented 3 months ago

Those metrics are all produced by bclconvert/bcl2fastq (not RTA). So you have to run those tools to get the metrics