make error

[kvshams]

I am getting the similar error as (https://github.com/Illumina/isaac2/issues/1) I am using Red Hat 4.4.5-6 version (Linux version 2.6.32-220.el6.x86_64) I have already included #include in between lines 154 and 155 and still getting the error. How could I fix the same

ERROR MESSAGE

[root@master ISAAC2]# make -- install prefix: ../ISAAC2/ -- install exec prefix: ../ISAAC2/ -- install bin dir: bin -- install lib dir: lib/iSAAC-02.15.10.21 -- install libexec dir: libexec/iSAAC-02.15.10.21 -- install data dir: share/iSAAC-02.15.10.21 -- Could NOT find Boost -- Boost 1.59.0 not found. Boost will be built from the distribution... Decompressing /illumina/Softwares/isaac2-master/src/../redist/boost_1_59_0.tar.bz2 Building Boost.Build engine with toolset gcc... tools/build/src/engine/bin.linuxx86_64/b2 Unicode/ICU support for Boost.Regex?... not found. Backing up existing Boost.Build configuration in project-config.jam.4 Generating Boost.Build configuration in project-config.jam...

Bootstrapping is done. To build, run:

./b2

To adjust configuration, edit 'project-config.jam'. Further information:

• Command line help: ./b2 --help
• Getting started guide: http://www.boost.org/more/getting_started/unix-variants.html
• Boost.Build documentation: http://www.boost.org/build/doc/html/index.html

Performing configuration checks

- 32-bit                   : no  (cached)
- 64-bit                   : yes (cached)
- arm                      : no  (cached)
- mips1                    : no  (cached)
- power                    : no  (cached)
- sparc                    : no  (cached)
- x86                      : yes (cached)
- symlinks supported       : yes (cached)
- zlib                     : yes (cached)
- has_icu builds           : no  (cached)
- lockfree boost::atomic_flag : yes (cached)

Component configuration:

- atomic                   : not building
- chrono                   : not building
- container                : not building
- context                  : not building
- coroutine                : not building
- coroutine2               : not building
- date_time                : building
- exception                : not building
- filesystem               : building
- graph                    : not building
- graph_parallel           : not building
- iostreams                : building
- locale                   : not building
- log                      : not building
- math                     : not building
- mpi                      : not building
- program_options          : building
- python                   : not building
- random                   : not building
- regex                    : building
- serialization            : building
- signals                  : not building
- system                   : building
- test                     : not building
- thread                   : building
- timer                    : not building
- wave                     : not building

...patience... ...patience... ...found 24581 targets... boost-1_59_0 installed successfully -- Successfuly built boost 1.59.0 from the distribution package... -- inttypes.h found as 1 -- malloc.h found as 1 -- memory.h found as 1 -- signal.h found as 1 -- stdint.h found as 1 -- stdlib.h found as 1 -- string.h found as 1 -- strings.h found as 1 -- time.h found as 1 -- sys/stat.h found as 1 -- unistd.h found as 1 -- No support for NUMA -- Found ZLIB header: 1/zlib.h -- Found ZLIB library: /usr/lib64/libz.so -- gzip compression supported -- Found RT header: 1/time.h -- Found RT library: /usr/lib64/librt.so -- adding librt dependency to support clock_gettime linking on legacy platforms -- Found PTHREAD header: 1/pthread.h -- Found PTHREAD library: /usr/lib64/libpthread.so -- pthread supported -- Boost version: 1.59.0 -- Found the following Boost libraries: -- date_time -- filesystem -- iostreams -- program_options -- regex -- serialization -- system -- thread -- using compiler: gcc version 4.4.6 -- No ccache found -- Adding the c++ library subdirectory: bgzf -- Adding the c++ library subdirectory: common -- Adding the c++ library subdirectory: oligo -- Adding the c++ library subdirectory: io -- Adding the c++ library subdirectory: rta -- Adding the c++ library subdirectory: flowcell -- Adding the c++ library subdirectory: demultiplexing -- Adding the c++ library subdirectory: xml -- Adding the c++ library subdirectory: reference -- Adding the c++ library subdirectory: bam -- Adding the c++ library subdirectory: options -- Adding the c++ library subdirectory: statistics -- Adding the c++ library subdirectory: alignment -- Adding the c++ library subdirectory: build -- Adding the c++ library subdirectory: package -- Adding the c++ library subdirectory: reports -- Adding the c++ library subdirectory: workflow -- Adding the c++ program subdirectory: bin -- Adding the c++ program subdirectory: libexec -- Doxygen: /usr/bin/doxygen. Dot: DOXYGEN_DOT_EXECUTABLE-NOTFOUND. -- Creating Doxygen config file: /illumina/Softwares/ISAAC2/c++/Doxyfile -- Markdown: /usr/bin/markdown. -- Configuring done -- Generating done -- Build files have been written to: /illumina/Softwares/ISAAC2 [ 0%] Built target iSAAC_OPT Scanning dependencies of target isaac_bgzf make[2]: Warning: File `/illumina/Softwares/isaac2-master/src/c++/lib/bgzf/BgzfReader.cpp' has modification time 2.3e+04 s in the future [ 1%] Building CXX object c++/lib/bgzf/CMakeFiles/isaac_bgzf.dir/BgzfReader.cpp.o In file included from /illumina/Softwares/isaac2-master/src/c++/include/common/Threads.hpp:26, from /illumina/Softwares/isaac2-master/src/c++/include/bgzf/BgzfReader.hh:29, from /illumina/Softwares/isaac2-master/src/c++/lib/bgzf/BgzfReader.cpp:25: /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:23:18: error: atomic: No such file or directory In file included from /illumina/Softwares/isaac2-master/src/c++/include/common/Threads.hpp:26, from /illumina/Softwares/isaac2-master/src/c++/include/bgzf/BgzfReader.hh:29, from /illumina/Softwares/isaac2-master/src/c++/lib/bgzf/BgzfReader.cpp:25: /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:145: error: ‘atomicint’ in namespace ‘std’ does not name a type /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh: In constructor ‘isaac::common::detail::CerrBlocker::CerrBlocker()’: /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:149: error: ‘cerrBlocked’ was not declared in this scope /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh: In static member function ‘static bool isaac::common::detail::CerrBlocker::blocked()’: /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:158: error: ‘cerrBlocked’ was not declared in this scope /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh: In destructor ‘isaac::common::detail::CerrBlocker::~CerrBlocker()’: /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:188: error: ‘cerrBlocked’ was not declared in this scope /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:189: error: ‘cerrBlocked’ was not declared in this scope /illumina/Softwares/isaac2-master/src/c++/lib/bgzf/BgzfReader.cpp: In member function ‘void isaac::bgzf::ParallelBgzfReader::open(const boost::filesystem::path&)’: /illumina/Softwares/isaac2-master/src/c++/lib/bgzf/BgzfReader.cpp:153: error: no match for ‘operator<<’ in ‘(((const isaac::common::detail::CerrLocker)isaac_cerr_lock)->isaac::common::detail::CerrLocker::cerrBlocked() ? boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((const boost::iostreams::null_sink&)((const boost::iostreams::nullsink)(& boost::iostreams::null_sink()))), -0x00000000000000001l, -0x00000000000000001l, 0u) : boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((std::basic_ostream<char, std::char_traits >&)(& std::cerr)), -0x00000000000000001l, -0x00000000000000001l)) << isaac::common::detail::ThreadTimestamp()’ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:108: note: candidates are: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ostream<_CharT, Traits>& ()(std::basic_ostream<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:117: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ios<_CharT, Traits>& ()(std::basic_ios<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:127: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::iosbase& ()(std::ios_base&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:165: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:169: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:173: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(bool) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:91: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:180: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:105: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:191: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:200: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:204: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:209: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:213: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(float) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:221: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:225: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, Traits>::operator<<(const void) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:119: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_streambuf<_CharT, Traits>) [with _CharT = char, _Traits = std::chartraits] /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:121: note: std::ostream& isaac::common::detail::operator<<(std::ostream&, const isaac::common::detail::ThreadTimestamp&) /illumina/Softwares/isaac2-master/src/c++/lib/bgzf/BgzfReader.cpp: In member function ‘void isaac::bgzf::ParallelBgzfReader::readMoreDataParallel(unsigned int, std::istream&, char, size_t, size_t&)’: /illumina/Softwares/isaac2-master/src/c++/lib/bgzf/BgzfReader.cpp:217: error: no match for ‘operator<<’ in ‘(((const isaac::common::detail::CerrLocker)isaac_cerr_lock)->isaac::common::detail::CerrLocker::cerrBlocked() ? boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((const boost::iostreams::null_sink&)((const boost::iostreams::nullsink)(& boost::iostreams::null_sink()))), -0x00000000000000001l, -0x00000000000000001l, 0u) : boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((std::basic_ostream<char, std::char_traits >&)(& std::cerr)), -0x00000000000000001l, -0x00000000000000001l)) << isaac::common::detail::ThreadTimestamp()’ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:108: note: candidates are: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ostream<_CharT, Traits>& ()(std::basic_ostream<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:117: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ios<_CharT, Traits>& ()(std::basic_ios<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:127: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::iosbase& ()(std::ios_base&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:165: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:169: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:173: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(bool) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:91: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:180: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:105: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:191: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:200: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:204: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:209: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:213: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(float) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:221: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:225: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, Traits>::operator<<(const void) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:119: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_streambuf<_CharT, Traits>) [with _CharT = char, _Traits = std::char_traits] /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:121: note: std::ostream& isaac::common::detail::operator<<(std::ostream&, const isaac::common::detail::ThreadTimestamp&) /illumina/Softwares/isaac2-master/src/c++/lib/bgzf/BgzfReader.cpp:238: error: no match for ‘operator<<’ in ‘(((const isaac::common::detail::CerrLocker)isaac_cerr_lock)->isaac::common::detail::CerrLocker::cerrBlocked() ? boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((const boost::iostreams::null_sink&)((const boost::iostreams::nullsink)(& boost::iostreams::null_sink()))), -0x00000000000000001l, -0x00000000000000001l, 0u) : boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((std::basic_ostream<char, std::char_traits >&)(& std::cerr)), -0x00000000000000001l, -0x00000000000000001l)) << isaac::common::detail::ThreadTimestamp()’ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:108: note: candidates are: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ostream<_CharT, Traits>& ()(std::basic_ostream<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:117: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ios<_CharT, Traits>& ()(std::basic_ios<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:127: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::iosbase& ()(std::ios_base&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:165: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:169: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:173: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(bool) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:91: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:180: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:105: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:191: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:200: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:204: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:209: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:213: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(float) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:221: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:225: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, Traits>::operator<<(const void) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:119: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_streambuf<_CharT, Traits>) [with _CharT = char, _Traits = std::char_traits] /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:121: note: std::ostream& isaac::common::detail::operator<<(std::ostream&, const isaac::common::detail::ThreadTimestamp&) /illumina/Softwares/isaac2-master/src/c++/lib/bgzf/BgzfReader.cpp:243: error: no match for ‘operator<<’ in ‘(((const isaac::common::detail::CerrLocker*)isaac_cerr_lock)->isaac::common::detail::CerrLocker::cerrBlocked() ? boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((const boost::iostreams::null_sink&)((const boost::iostreams::nullsink)(& boost::iostreams::null_sink()))), -0x00000000000000001l, -0x00000000000000001l, 0u) : boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((std::basic_ostream<char, std::char_traits >&)(& std::cerr)), -0x00000000000000001l, -0x00000000000000001l)) << isaac::common::detail::ThreadTimestamp()’ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:108: note: candidates are: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ostream<_CharT, Traits>& ()(std::basic_ostream<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:117: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ios<_CharT, Traits>& ()(std::basic_ios<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:127: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::iosbase& ()(std::ios_base&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:165: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:169: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:173: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(bool) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:91: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:180: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:105: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:191: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:200: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:204: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:209: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:213: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(float) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:221: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:225: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, Traits>::operator<<(const void) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:119: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_streambuf<_CharT, Traits>) [with _CharT = char, _Traits = std::char_traits] /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:121: note: std::ostream& isaac::common::detail::operator<<(std::ostream&, const isaac::common::detail::ThreadTimestamp&) In file included from /illumina/Softwares/isaac2-master/src/c++/include/bgzf/BgzfReader.hh:30, from /illumina/Softwares/isaac2-master/src/c++/lib/bgzf/BgzfReader.cpp:25: /illumina/Softwares/isaac2-master/src/c++/include/io/FileBufWithReopen.hh: In member function ‘typename std::basic_filebuf<T0, T1>::__filebuf_type* isaac::io::basic_FileBufWithReopen<_CharT, Traits>::reopen(const char, size_t, isaac::io::basic_FileBufWithReopen<_CharT, _Traits>::FadviseFlags) [with _CharT = char, _Traits = std::char_traits]’: /illumina/Softwares/isaac2-master/src/c++/include/io/FileBufWithReopen.hh:77: instantiated from ‘typename std::basic_filebuf<T0, T1>::__filebuftype isaac::io::basic_FileBufWithReopen<_CharT, Traits>::reopen(const char, isaac::io::basic_FileBufWithReopen<_CharT, _Traits>::FadviseFlags) [with _CharT = char, _Traits = std::chartraits]’ /illumina/Softwares/isaac2-master/src/c++/lib/bgzf/BgzfReader.cpp:146: instantiated from here /illumina/Softwares/isaac2-master/src/c++/include/io/FileBufWithReopen.hh:102: error: no match for ‘operator<<’ in ‘(((const isaac::common::detail::CerrLocker)isaac_cerr_lock)->isaac::common::detail::CerrLocker::cerrBlocked() ? boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((const boost::iostreams::null_sink&)((const boost::iostreams::nullsink)(& boost::iostreams::null_sink()))), -0x00000000000000001l, -0x00000000000000001l, 0u) : boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((std::basic_ostream<char, std::char_traits >&)(& std::cerr)), -0x00000000000000001l, -0x00000000000000001l)) << isaac::common::detail::ThreadTimestamp()’ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:108: note: candidates are: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ostream<_CharT, Traits>& ()(std::basic_ostream<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:117: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ios<_CharT, Traits>& ()(std::basic_ios<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:127: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::iosbase& ()(std::ios_base&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:165: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:169: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:173: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(bool) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:91: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:180: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:105: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:191: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:200: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:204: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:209: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:213: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(float) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:221: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:225: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, Traits>::operator<<(const void) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:119: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_streambuf<_CharT, Traits>) [with _CharT = char, _Traits = std::char_traits] /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:121: note: std::ostream& isaac::common::detail::operator<<(std::ostream&, const isaac::common::detail::ThreadTimestamp&) /illumina/Softwares/isaac2-master/src/c++/include/io/FileBufWithReopen.hh:109: error: no match for ‘operator<<’ in ‘(((const isaac::common::detail::CerrLocker)isaac_cerr_lock)->isaac::common::detail::CerrLocker::cerrBlocked() ? boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((const boost::iostreams::null_sink&)((const boost::iostreams::nullsink)(& boost::iostreams::null_sink()))), -0x00000000000000001l, -0x00000000000000001l, 0u) : boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((std::basic_ostream<char, std::char_traits >&)(& std::cerr)), -0x00000000000000001l, -0x00000000000000001l)) << isaac::common::detail::ThreadTimestamp()’ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:108: note: candidates are: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ostream<_CharT, Traits>& ()(std::basic_ostream<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:117: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ios<_CharT, Traits>& ()(std::basic_ios<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:127: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::iosbase& ()(std::ios_base&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:165: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:169: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:173: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(bool) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:91: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:180: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:105: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:191: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:200: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:204: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:209: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:213: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(float) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:221: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:225: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, Traits>::operator<<(const void) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:119: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_streambuf<_CharT, Traits>) [with _CharT = char, _Traits = std::char_traits] /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:121: note: std::ostream& isaac::common::detail::operator<<(std::ostream&, const isaac::common::detail::ThreadTimestamp&) /illumina/Softwares/isaac2-master/src/c++/include/io/FileBufWithReopen.hh:116: error: no match for ‘operator<<’ in ‘(((const isaac::common::detail::CerrLocker)isaac_cerr_lock)->isaac::common::detail::CerrLocker::cerrBlocked() ? boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((const boost::iostreams::null_sink&)((const boost::iostreams::nullsink)(& boost::iostreams::null_sink()))), -0x00000000000000001l, -0x00000000000000001l, 0u) : boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((std::basic_ostream<char, std::char_traits >&)(& std::cerr)), -0x00000000000000001l, -0x00000000000000001l)) << isaac::common::detail::ThreadTimestamp()’ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:108: note: candidates are: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ostream<_CharT, Traits>& ()(std::basic_ostream<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:117: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ios<_CharT, Traits>& ()(std::basic_ios<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:127: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::iosbase& ()(std::ios_base&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:165: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:169: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:173: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(bool) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:91: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:180: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:105: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:191: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:200: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:204: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:209: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:213: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(float) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:221: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:225: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, Traits>::operator<<(const void) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:119: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_streambuf<_CharT, Traits>) [with _CharT = char, _Traits = std::chartraits] /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:121: note: std::ostream& isaac::common::detail::operator<<(std::ostream&, const isaac::common::detail::ThreadTimestamp&) In file included from /illumina/Softwares/isaac2-master/src/c++/include/bgzf/BgzfReader.hh:29, from /illumina/Softwares/isaac2-master/src/c++/lib/bgzf/BgzfReader.cpp:25: /illumina/Softwares/isaac2-master/src/c++/include/common/Threads.hpp: In member function ‘void isaac::common::BasicThreadVector::cycle(isaac::common::BasicThreadVector::Executor, unsigned int) [with bool crashOnExceptions = false]’: /illumina/Softwares/isaac2-master/src/c++/include/common/Threads.hpp:214: instantiated from ‘void isaac::common::BasicThreadVector::execute(F, unsigned int) [with F = boost::_bi::bind_t<void, boost::mfi::mf5<void, isaac::bgzf::ParallelBgzfReader, unsigned int, std::istream&, char, long unsigned int, size_t&>, boost::_bi::list6boost::_bi::value<isaac::bgzf::ParallelBgzfReader, boost::arg<1>, boost::reference_wrapper<std::basic_istream<char, std::char_traits > >, boost::_bi::value<char>, boost::_bi::value, boost::reference_wrapper > >, bool crashOnExceptions = false]’ /illumina/Softwares/isaac2-master/src/c++/lib/bgzf/BgzfReader.cpp:304: instantiated from here /illumina/Softwares/isaac2-master/src/c++/include/common/Threads.hpp:252: error: no match for ‘operator<<’ in ‘(((const isaac::common::detail::CerrLocker)isaac_cerr_lock)->isaac::common::detail::CerrLocker::cerrBlocked() ? boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((const boost::iostreams::null_sink&)((const boost::iostreams::nullsink)(& boost::iostreams::null_sink()))), -0x00000000000000001l, -0x00000000000000001l, 0u) : boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((std::basic_ostream<char, std::char_traits >&)(& std::cerr)), -0x00000000000000001l, -0x00000000000000001l)) << isaac::common::detail::ThreadTimestamp()’ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:108: note: candidates are: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ostream<_CharT, Traits>& ()(std::basic_ostream<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:117: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ios<_CharT, Traits>& ()(std::basic_ios<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:127: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::iosbase& ()(std::ios_base&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:165: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:169: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:173: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(bool) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:91: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:180: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:105: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:191: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:200: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:204: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:209: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:213: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(float) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:221: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:225: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, Traits>::operator<<(const void) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:119: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_streambuf<_CharT, Traits>) [with _CharT = char, _Traits = std::char_traits] /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:121: note: std::ostream& isaac::common::detail::operator<<(std::ostream&, const isaac::common::detail::ThreadTimestamp&) /illumina/Softwares/isaac2-master/src/c++/include/common/Threads.hpp: In member function ‘void isaac::common::BasicThreadVector::safeExecute(size_t, boost::unique_lockboost::mutex&) [with bool crashOnExceptions = false]’: /illumina/Softwares/isaac2-master/src/c++/include/common/Threads.hpp:336: instantiated from ‘void isaac::common::BasicThreadVector::threadFunc(size_t) [with bool crashOnExceptions = false]’ /illumina/Softwares/isaac2-master/src/c++/include/common/Threads.hpp:168: instantiated from ‘isaac::common::BasicThreadVector::BasicThreadVector(size_t) [with bool crashOnExceptions = false]’ /illumina/Softwares/isaac2-master/src/c++/include/bgzf/BgzfReader.hh:148: instantiated from here /illumina/Softwares/isaac2-master/src/c++/include/common/Threads.hpp:285: error: no match for ‘operator<<’ in ‘(((const isaac::common::detail::CerrLocker)isaac_cerr_lock)->isaac::common::detail::CerrLocker::cerrBlocked() ? boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((const boost::iostreams::null_sink&)((const boost::iostreams::nullsink)(& boost::iostreams::null_sink()))), -0x00000000000000001l, -0x00000000000000001l, 0u) : boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((std::basic_ostream<char, std::char_traits >&)(& std::cerr)), -0x00000000000000001l, -0x00000000000000001l)) << isaac::common::detail::ThreadTimestamp()’ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:108: note: candidates are: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ostream<_CharT, Traits>& ()(std::basic_ostream<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:117: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ios<_CharT, Traits>& ()(std::basic_ios<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:127: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::iosbase& ()(std::ios_base&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:165: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:169: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:173: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(bool) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:91: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:180: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:105: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:191: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:200: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:204: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:209: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:213: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(float) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:221: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:225: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, Traits>::operator<<(const void) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:119: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_streambuf<_CharT, Traits>) [with _CharT = char, _Traits = std::char_traits] /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:121: note: std::ostream& isaac::common::detail::operator<<(std::ostream&, const isaac::common::detail::ThreadTimestamp&) In file included from /illumina/Softwares/isaac2-master/src/c++/include/bgzf/BgzfReader.hh:29, from /illumina/Softwares/isaac2-master/src/c++/lib/bgzf/BgzfReader.cpp:25: /illumina/Softwares/isaac2-master/src/c++/include/common/Threads.hpp:289: error: no match for ‘operator<<’ in ‘(((const isaac::common::detail::CerrLocker)isaac_cerr_lock)->isaac::common::detail::CerrLocker::cerrBlocked() ? boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((const boost::iostreams::null_sink&)((const boost::iostreams::nullsink)(& boost::iostreams::null_sink()))), -0x00000000000000001l, -0x00000000000000001l, 0u) : boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((std::basic_ostream<char, std::char_traits >&)(& std::cerr)), -0x00000000000000001l, -0x00000000000000001l)) << isaac::common::detail::ThreadTimestamp()’ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:108: note: candidates are: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ostream<_CharT, Traits>& ()(std::basic_ostream<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:117: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ios<_CharT, Traits>& ()(std::basic_ios<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:127: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::iosbase& ()(std::ios_base&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:165: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:169: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:173: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(bool) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:91: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:180: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:105: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:191: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:200: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:204: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:209: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:213: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(float) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:221: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:225: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, Traits>::operator<<(const void) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:119: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_streambuf<_CharT, Traits>) [with _CharT = char, _Traits = std::char_traits] /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:121: note: std::ostream& isaac::common::detail::operator<<(std::ostream&, const isaac::common::detail::ThreadTimestamp&) /illumina/Softwares/isaac2-master/src/c++/include/common/Threads.hpp:297: error: no match for ‘operator<<’ in ‘(((const isaac::common::detail::CerrLocker)isaac_cerr_lock)->isaac::common::detail::CerrLocker::cerrBlocked() ? boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((const boost::iostreams::null_sink&)((const boost::iostreams::nullsink)(& boost::iostreams::null_sink()))), -0x00000000000000001l, -0x00000000000000001l, 0u) : boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((std::basic_ostream<char, std::char_traits >&)(& std::cerr)), -0x00000000000000001l, -0x00000000000000001l)) << isaac::common::detail::ThreadTimestamp()’ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:108: note: candidates are: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ostream<_CharT, Traits>& ()(std::basic_ostream<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:117: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ios<_CharT, Traits>& ()(std::basic_ios<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:127: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::iosbase& ()(std::ios_base&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:165: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:169: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:173: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(bool) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:91: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:180: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:105: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:191: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:200: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:204: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:209: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:213: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(float) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:221: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:225: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, Traits>::operator<<(const void) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:119: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_streambuf<_CharT, Traits>) [with _CharT = char, _Traits = std::char_traits] /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:121: note: std::ostream& isaac::common::detail::operator<<(std::ostream&, const isaac::common::detail::ThreadTimestamp&) /illumina/Softwares/isaac2-master/src/c++/include/common/Threads.hpp:301: error: no match for ‘operator<<’ in ‘(((const isaac::common::detail::CerrLocker*)isaac_cerr_lock)->isaac::common::detail::CerrLocker::cerrBlocked() ? boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((const boost::iostreams::null_sink&)((const boost::iostreams::nullsink)(& boost::iostreams::null_sink()))), -0x00000000000000001l, -0x00000000000000001l, 0u) : boost::iostreams::filtering_stream<boost::iostreams::output, char, std::chartraits, std::allocator, boost::iostreams::public>(((std::basic_ostream<char, std::char_traits >&)(& std::cerr)), -0x00000000000000001l, -0x00000000000000001l)) << isaac::common::detail::ThreadTimestamp()’ /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:108: note: candidates are: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ostream<_CharT, Traits>& ()(std::basic_ostream<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:117: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ios<_CharT, Traits>& ()(std::basic_ios<_CharT, _Traits>&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:127: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::iosbase& ()(std::ios_base&)) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:165: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:169: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:173: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(bool) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:91: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:180: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:105: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:191: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:200: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:204: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long long unsigned int) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:209: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:213: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(float) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:221: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(long double) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/ostream:225: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, Traits>::operator<<(const void) [with _CharT = char, _Traits = std::char_traits] /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/bits/ostream.tcc:119: note: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_streambuf<_CharT, Traits>) [with _CharT = char, _Traits = std::char_traits] /illumina/Softwares/isaac2-master/src/c++/include/common/Debug.hh:121: note: std::ostream& isaac::common::detail::operator<<(std::ostream&, const isaac::common::detail::ThreadTimestamp&) make[2]: * [c++/lib/bgzf/CMakeFiles/isaac_bgzf.dir/BgzfReader.cpp.o] Error 1 make[1]: * [c++/lib/bgzf/CMakeFiles/isaac_bgzf.dir/all] Error 2 make: *\ [all] Error 2

Thanks Shams

[rpetrovski]

Shams, unfortunately gcc 4.4 is not able to compile iSAAC. According to your error log it seems to lack the header. The earliest supported gcc is 4.7.3.

Roman.