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Illumina / manta

Structural variant and indel caller for mapped sequencing data
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Reference genome mismatch: Reference fasta file is missing a chromosome found in the Normal BAM/CRAM file: 'ERCC-00002' #211

Open azzatha opened 4 years ago

azzatha commented 4 years ago

Greetings,

I'm trying to run manta on the bam file (RMNISTHS_30xdownsample.bam) from: https://github.com/genome-in-a-bottle/giab_data_indexes/blob/master/NA12878/alignment.index.NA12878_HiSeq_downsampled30X_GRCh37_10262015

I tried the human reference genome Homo_sapiens_assembly19.fasta

But I got the following error:

CONFIGURATION ERROR: Reference genome mismatch: Reference fasta file is missing a chromosome found in the Normal BAM/CRAM file: 'ERCC-00002'

Any advice? Thanks,

dfc-1931475 commented 1 year ago

hello，have u solved this bug? I met the same error too, may u give me some advice？