mcshaneab
commented
3 years ago I am having the same problem, were you able to resolve this? Any help would be appreciated!
Open AndreHolzer opened 4 years ago
mcshaneab
commented
3 years ago I am having the same problem, were you able to resolve this? Any help would be appreciated!
Hi,
I've installed manta (v1.6.0) via bioconda but when running the workflow I unfortunately receive the following error which I can not make sense of.
ERROR] Failed to complete sub-workflow task: 'mergeLocusGraphInputList' launched from master workflow, failed sub-workflow classname: 'listFileWorkflow' [ERROR] [mergeLocusGraphInputList] Error Message: [ERROR] [mergeLocusGraphInputList] Unhandled Exception in TaskRunner-Thread-mergeLocusGraphInputList [ERROR] [mergeLocusGraphInputList] Traceback (most recent call last): [ERROR] [mergeLocusGraphInputList] File "/home/ah830/miniconda3/envs/SVcalling-env-3/share/manta-1.6.0-0/lib/python/pyflow/pyflow.py", line 1069, in run [ERROR] [mergeLocusGraphInputList] (retval, retmsg) = self._run() [ERROR] [mergeLocusGraphInputList] File "/home/ah830/miniconda3/envs/SVcalling-env-3/share/manta-1.6.0-0/lib/python/pyflow/pyflow.py", line 1121, in _run [ERROR] [mergeLocusGraphInputList] self.workflow.workflow() [ERROR] [mergeLocusGraphInputList] File "/home/ah830/miniconda3/envs/SVcalling-env-3/share/manta-1.6.0-0/lib/python/mantaWorkflow.py", line 333, in workflow [ERROR] [mergeLocusGraphInputList] fp = open(self2.listFile, "w") [ERROR] [mergeLocusGraphInputList] IOError: [Errno 2] No such file or directory: '/AHS84-G2-T12_2020-06-11/vcf/manta/AHS84/workspace/svLocusGraph.bin.tmpdir/list.svLocusGraph.txt'Do you have any idea where the problem is and how to fix it? Many thanks!