Illumina / manta

Structural variant and indel caller for mapped sequencing data
GNU General Public License v3.0
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Can't compile without sudo - can't link to libstdc++.a on custom directory #249

Open lferreiraMD opened 3 years ago

lferreiraMD commented 3 years ago

Hello, I'm trying to compile manta-1.6.0 (and strelka) without sudo privileges on CentOS 7. I have the static library libstdc++.a saved in a custom directory (it's not installed globally on the cluster).

I can't get configure/make to find this library on my local directory. I've spent hours on stackoverflow and set multiple env variables to no avail.

I know there are binaries available. I want to compile it; as I do with all tools I use). It should not be such a hassle to compile it (or so I thought). And it is the whole point of sharing the source code, I guess.

Is there a way to compile without having to install libstdc++ globally? If so, how could I go about it? I'm guessing meddling with cmake files should do it. I have no idea how to do it, though...