search

Illumina / manta

Structural variant and indel caller for mapped sequencing data
GNU General Public License v3.0
404 stars 154 forks source link

No FORMAT field in the output vcf file #279

Open Abusamra opened 2 years ago

Abusamra commented 2 years ago

Dear I used manta latest version the command is:

/home/habusamra/manta-1.6.0/bin/configManta.py --normalBam /fefs1/BDC/Analysis/NGS_Analysis/habusamra/210812_A00840_0019_AHWJF5DRXX/Alignment_Germline_Aziz/PBG-1070-21_S11.bam --bam /fefs1/BDC/Analysis/NGS_Analysis/habusamra/201111_A00840_0011_BHM7MKDRXX/Alignment_Germline_Aziz_1/GM24385_2_S15.bam --referenceFasta /fefs1/BDC/Analysis/NGS_Analysis/genome/genome.fa --runDir /fefs1/BDC/Analysis/NGS_Analysis/habusamra/testMantaHG002Exome

The generated vcf file has no format field????