[Question] How does Manta handle PCR duplicates?

Illumina / manta

Structural variant and indel caller for mapped sequencing data

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Open tbaker18 opened 2 years ago

tbaker18 commented 2 years ago

Hello,

General question, does Manta require PCR duplicates to be removed or is having the PCR duplicates marked in the bam sufficient?

esamorodnitsky commented 1 year ago

I'd like to know that too!