Illumina / manta

Structural variant and indel caller for mapped sequencing data
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Depth based exclusion process question #297

Open hayeon-pak opened 1 year ago

hayeon-pak commented 1 year ago

Hi!

In manta, there isn't process to exclude blacklist or something.

But Manta already implements a depth based exclusion automatically. Then, in my result calls, there is no these region? or I have to filtering by using FILTER 'PASS' or something?

Thank you :)