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Illumina / manta

Structural variant and indel caller for mapped sequencing data
GNU General Public License v3.0
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Using Amazon S3 bucket #34

Open ghost opened 8 years ago

ghost commented 8 years ago

Hi

I am trying to use Manta and access bam files directly on the Amazon Cloud S3 bucket, rather than creating the volume on the cloud instance. I am wondering whether Manta supports this function, or takes stdin from http address.

The recent version of Samtools enables this function to get sam/bam information from the cloud storage directly (example cmd: ./samtools view http://S3bucketLocation/BamFiles.bam), and saves lots of cost on processing.

Thanks Joon

james-guevara commented 2 years ago

Hi all, is there an update on allowing for this functionality? How easy would it be to modify the code to enable reading from an S3 bucket?