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Illumina / strelka

Strelka2 germline and somatic small variant caller
GNU General Public License v3.0
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Strelka2 and PacBio HiFi reads #171

Closed sjin09 closed 4 years ago

sjin09 commented 4 years ago

I was wondering whether the authors have tested germline mutation and somatic mutation calling from CCS reads with Strelka2 and whether the authors would recommend this approach.

sjin09 commented 4 years ago

I just want to add for people considering using strelka2 with HiFi that strelka2 cannot handle HiFi base quality scores at the moment and as a result strelka2 fails to complete.