Hi. I really want to use strelka2 for somatic variant calling.
I could not begin because I failed to install it.
There are command lines for Linux but not for MacOS at the installation page.
Did anyone succeed in installing and using strelka2 on MacOS?
I saw similar problems at the following page, but I could not solve my problem............
https://github.com/Illumina/strelka/issues/164
I downloaded strelka-2.9.10.release_src.
When I tried to run the demo using following command:
bash runStrelkaSomaticWorkflowDemo.bash
It gave an error: Strelka must be installed prior to running demo.
So,
I used the command line:
conda install -c bioconda strelka
conda install -c bioconda/label/cf201901 strelka
conda install -c conda-forge strelka
The error was as follows:
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
Hi. I really want to use strelka2 for somatic variant calling. I could not begin because I failed to install it. There are command lines for Linux but not for MacOS at the installation page.
Did anyone succeed in installing and using strelka2 on MacOS? I saw similar problems at the following page, but I could not solve my problem............ https://github.com/Illumina/strelka/issues/164
I downloaded strelka-2.9.10.release_src. When I tried to run the demo using following command: bash runStrelkaSomaticWorkflowDemo.bash
It gave an error: Strelka must be installed prior to running demo.
So, I used the command line: conda install -c bioconda strelka conda install -c bioconda/label/cf201901 strelka conda install -c conda-forge strelka
The error was as follows: Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
Current channels:
To search for alternate channels that may provide the conda package you're looking for, navigate to
and use the search bar at the top of the page.
Thank you so much. I'd really appreciate any comments.