Variant in RNA - Githubissues

Illumina / strelka

Strelka2 germline and somatic small variant caller

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Variant in RNA #196

Open alfonso-lam opened 3 years ago

alfonso-lam commented 3 years ago

Hi, I have a BAM file from my RNA library. There is a variant clearly visible in IGV but it is not being called by Strelka. Is there any parameter in Strelka that I can play and see if I can make the variant be called? Thanks Alfonso