Illumina / strelka

Strelka2 germline and somatic small variant caller
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Scoring model features #212

Open LeiHaoa opened 2 years ago

LeiHaoa commented 2 years ago

Hi, I have trained the EVS model using my own dataset, but the evaluation results are not as good as the default JSON file provided by Strelka2. So, I'm very curious about the feature importance of the somatic indel and snv model provided by strelka2. Can I get the feature importance somewhere?? I can't get the feature importance information information in the json file. But I can find the information through .pickle file. Can you provide the .pickle of the default EVS model?? many thanks!

Kind regards, Haoz