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Illumina / strelka

Strelka2 germline and somatic small variant caller
GNU General Public License v3.0
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INFO/DP field not reported #219

Open SusiJo opened 1 year ago

SusiJo commented 1 year ago

Hi there, We are using strelka for one of our pipelines and were wondering if it is possible to output the INFO/DP field in addition to the FORMAT/DP field. We would need that for extracting variant depths with bcftools stats. Thanks in advance!

faramarzgsm commented 2 weeks ago

Hi there, I want to combine and merge two VCF files produced by strelka2 and gatk-haplotypecaller and then I want to filter variations base on INFO/DP field. How can I add this tag to the output VCF produced by strelka?

If it is impossible now, why you don't add this option to the strelka. This INFO/DP filed is so useful.