search

Image-Py / imagepy

Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
http://imagepy.org
BSD 4-Clause "Original" or "Old" License
1.3k stars 333 forks source link

Dicom image import issues #15

Closed xycyx closed 5 years ago

xycyx commented 6 years ago

1. Incorrect display for 16 uint dicom file When I load a 4D uint16 grey scale dicom file to the software, it displayed the image with some issues like below: capture1 After converting to 8-bit, it recognizes it as 8-bit RGB. capture2

**2. Cannot display 3D image Only displayed the first slice of 3D image. Is it possible to load the 3D image from dicom or video file instead of using the a sequence of 2D images?

Thanks.

A 4-D dicom example (x, y, channel, z): test_dicom.zip

yxdragon commented 6 years ago

@xycyx thanks, I saw, ImagePy now did not support 4D image, I will have a look how ImageJ do! I think it is not real 4D, It is just a sequence of 3D, I will think how to display "4D". About reading 3D image, https://github.com/Image-Py/itk-plgs, some ITK plugins, and you can add new format reader and writer esaily. About reading video, I would write some demo and upload here: https://github.com/Image-Py/opencv-plgs. (ImagePy is just a pure python framework, based on numpy, scipy, scikit-image, And I would to build many plugins with opencv, tf, itk... finally build a image processing ecosystem, and user can write and upload their plugins to ImagePy)