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Imageomics / char-sim

Pipeline to create model for comparing character state descriptions including ontology similarity
MIT License
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add simple rule that utilizes a conda environment #3

Open balhoff opened 3 months ago

balhoff commented 3 months ago

This will be for learning/demonstration purposes so that we can build on it for further parts of the workflow. The rule could be something that simply loads the datasets into the pytorch library and prints some statistics.

I think this doc will provide some starting points: https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html#integrated-package-management

KSoumya commented 3 months ago

Initiated a PR that adds a simple rule utilizing conda environment for pytorch.