Point branch references to main at all places

ImagingDataCommons / CloudSegmentator

Medical imaging segmentation workflows for FireCloud (Terra) and Seven Bridges Cancer Genomics Cloud

Apache License 2.0

3 stars 2 forks source link

Point branch references to main at all places #42

Closed vkt1414 closed 10 months ago

vkt1414 commented 10 months ago

This PR

fixes the references back to main now that no other PRs are pending
removes the sample binary file from the code base and notebooks will start to use the release attachments

Once this PR is merged, I'll test rewriting git history by removing the large binary files in my forked repo and will do the same to the IDC's main branch.

Then we can remove all other branches.

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vkt1414 commented 10 months ago

Note to self: git filter-branch --force --index-filter 'git rm --cached --ignore-unmatch sampleManifests/dicomsegAndRadiomicsSR_DICOMsegFiles.tar.lz4' --prune-empty --tag-name-filter cat -- --all git filter-branch --force --index-filter 'git rm --cached --ignore-unmatch sampleManifests/inferenceNiftiFiles.tar.lz4' --prune-empty --tag-name-filter cat -- --all

git push origin --force --all

thanks to https://stackoverflow.com/questions/43762338/how-to-remove-file-from-git-history#:~:text=Using%20git%2Dfilter%2Drepo%3A

vkt1414 commented 10 months ago

@fedorov unfortunately I do not seem to have the permission to force push to main branch. Could you run these commands whenever you can? I deleted the other branches.