Simplify perframe extraction workflow

ImagingDataCommons / CloudSegmentator

Medical imaging segmentation workflows for FireCloud (Terra) and Seven Bridges Cancer Genomics Cloud

Apache License 2.0

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Simplify perframe extraction workflow #57

Closed vkt1414 closed 7 months ago

vkt1414 commented 7 months ago

Perframe functional group sequence extraction is simplified. Previously the workflow used to take urls to the compressed seg file and that needed a service account, as the default compute engine service account will not be able to download files from Terra workspace bucket.

This time around, since the output seg files already reside in Terra workspace bucket, instead of file urls, files themselves are provided as input in the wdl.

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