ImagingDataCommons / slim

Interoperable web-based slide microscopy viewer and annotation tool
https://imagingdatacommons.github.io/slim/
Apache License 2.0
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Improvements to ROI presentation and UI support #184

Open fedorov opened 9 months ago

fedorov commented 9 months ago

Right now, on this example, same color is applied, and it is impossible for the user to tell different kinds of ROI one from another

https://andrey-slim-test.web.app/studies/2.25.155017484756498730492136597238994838876/series/1.3.6.1.4.1.5962.99.1.3434988325.342625608.1687062201125.4.0

fedorov commented 9 months ago

Additional ideas related to visualization of the individual regions:

fedorov commented 8 months ago

Related suggestions from Javed Khan group communicated by @curtislisle:

fedorov commented 8 months ago

Feedback from Tom G:

being able switch on ALL the ROI’s for a given class would be nice, eg, a button to just turn on all the stroma. Also, it seems like all the ROI’s are the same blue color. Differentiating by class would be helpful, ie necrosis = red; stroma = blue, etc.

fedorov commented 6 months ago

Example of how contours are shown in Aperio ImageScope (just to take into account while deciding what to do in Slim):

image