warnings with nanoasv --dry-run

[frederic-mahe]

(running on a fresh ubuntu-server-24-04, with Miniconda3)

/home/fred/NanoASV/workflow/run.sh: line 252: [: missing `]'
Checking reference format
/home/fred/NanoASV/workflow/snakefile:200: SyntaxWarning: invalid escape sequence '\+'
  "tmp_files/08_phylogeny/.phylogeny.done"
/home/fred/NanoASV/workflow/snakefile:222: SyntaxWarning: invalid escape sequence '\+'
  "tmp_files/.export.done"

same thing with nanoasv --mock

[ImagoXV]

I know, I'm not sure what is triggering this warning. Maybe the fact that those are hidden files ? I can remove the hidden status, it does not matter, it is in tmp files in the end

Edit : Removing hidden status didn't cure

/home/user/NanoASV/workflow/snakefile:223: SyntaxWarning: invalid escape sequence '\+' 
"tmp_files/export.done" 

And there is "+" sign in those lines neither.

The only + written in code is

in snakemake file : grep -o '[^ ]\+$' tmp_files/06_sam_to_bam_format/{wildcards.barcode}_abundance.tsv > {output.ASV_list} But it is currently on lines 115 and 118. They have no link with the error and should be safe.

If you have any idea, I'm taking

[ImagoXV]

For line 252 related error, it comes from the way I wrote echo functions. This is fixed in d70701a3086b798d46a97e5b5ed399661acc9edb and a37c736d6d9f67589a970db38a32999ef0bb8d30