Closed ImagoXV closed 9 months ago
It worked with only one thread.
I highly doubt it can run with more than that.
EDIT : It does not run with 2 threads.
I hope increasing the number of sequences will not increase memory usage.
Maybe after changing bwa for bwa-mem2 IDK
Step 4/9 : Adapter trimming with Porechop
Step 5/9 : Subsampling
Step 6/9 : Reads alignements with bwa against SILVA_138.1
Step 7/9 : Skipped - no unknown sequence
Step 8/9 : Phylogeny with MAFFT and FastTree
Step 9/9 : Phylosequization with R and phyloseq
[1] "Exporting phyloseq object"
Data treatment is over.
NanoASV took 1076 seconds to perform.
Don't forget to cite NanoASV and its dependencies if it allows you to treat your data.
This indicates a memory related error.
If only the MK1C was running dozens of useless job in background.
I'll find a way