Closed jamesboot closed 1 year ago
Hi there,
I think this is because the consensus hierarchical clustering algorithm used by FlowSOM by default try to cluster the data into 2 to maxK clusters. By setting meta.k to 2, you are indirectly also setting maxK to 2, which causes the consensus hierarchical clustering algorithm to raise an error as it expects maxK to be greater than 2.
I don't think there is any work around this unfortunately.
@ghar1821 I might add a more specific error message to run.flowsom
to flag this if meta.k is set to 2.
Hello,
Thanks for a great package and documentation. Ran into an interesting problem. We are playing around with our clustering. When I set meta.k to 2 in the run.flowsom() function I get the following error:
I don't get this error if I set the value greater than 2. Is there a reason for this? Any work around?
Cheers!