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ImmuneDynamics / Spectre

A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
https://immunedynamics.github.io/spectre/
MIT License
56 stars 21 forks source link

Discovery workflow with batch alignment using CytoNorm -- link broken #189

Closed mariecrane closed 3 months ago

mariecrane commented 4 months ago

I'm trying to access your discovery workflow with batch alignment using CytoNorm but the link appears to be broken. Is there documentation available elsewhere while the site is down?

tomashhurst commented 4 months ago

Ah apologies that’s our fault, will update it shortly — but here is the actual link:

https://unisyd-my.sharepoint.com/personal/thomas_ashhurst_sydney_edu_au/_layouts/15/onedrive.aspx?id=%2Fpersonal%2Fthomas%5Fashhurst%5Fsydney%5Fedu%5Fau%2FDocuments%2FShared%2FSpectre%20PDFs%2FDiscovery%20workflow%20with%20batch%20alignment%20using%20CytoNorm%2Dv19%2D20240415%5F044409%2Epdf&parent=%2Fpersonal%2Fthomas%5Fashhurst%5Fsydney%5Fedu%5Fau%2FDocuments%2FShared%2FSpectre%20PDFs&ga=1

Tom

From: Marie Crane @.> Sent: Tuesday, May 14, 2024 16:13 To: ImmuneDynamics/Spectre @.> Cc: Subscribed @.***> Subject: [ImmuneDynamics/Spectre] Discovery workflow with batch alignment using CytoNorm -- link broken (Issue #189)

I'm trying to access your discovery workflow with batch alignment using CytoNorm but the linkhttps://immunedynamics.io/spectre/cytometry/%5Bhttps://wiki.centenary.org.au/x/zGCdCw%5D(https://unisyd-my.sharepoint.com/:b:/g/personal/thomas_ashhurst_sydney_edu_au/ER-lPRlANL5BroO3cYIV1XMBBKETa4Ufa_4KtqjJtxyPUA?e=a0ashi) appears to be broken. Is there documentation available elsewhere while the site is down?

— Reply to this email directly, view it on GitHubhttps://github.com/ImmuneDynamics/Spectre/issues/189, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZYS63YSU57EH4JTLBVQ3LZCIS27AVCNFSM6AAAAABHWMQT56VHI2DSMVQWIX3LMV43ASLTON2WKOZSGI4TKNZVGY4DGMA. You are receiving this because you are subscribed to this thread.Message ID: @.***>

mariecrane commented 4 months ago

This link isn't working for me either. I can wait if you're working to fix it! Just wanted to make sure it was on your radar. Screenshot 2024-05-14 at 11 10 55 AM

tomashhurst commented 4 months ago

Hmm that's very odd -- I can see it OK even if not signed in, maybe I've broken something. If you email me at thomas.ashhurst@sydney.edu.au I can just send you the PDF.

image
tomashhurst commented 3 months ago

@mariecrane updated page for the CytoNorm workflow here: https://immunedynamics.io/spectre/cytonorm/. Give it a try and let us know if it makes sense.