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ImmuneDynamics / Spectre

A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
https://immunedynamics.github.io/spectre/
MIT License
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Adapting conversion of data.table to sce for input data.frame #193

Open denvercal1234GitHub opened 4 months ago

denvercal1234GitHub commented 4 months ago

Hi all,

Thank you so much again for your patience and continued support. I look forward to new updates.

In the mean time, I wonder if you could help me adapt the tutorial for converting data.table to sce for data.frame as an input? On the surface, dt and df look the same but I want to make sure the conversion does not lead to unexpected behaviour in resulting sce.

Thank you for your help.

https://immunedynamics.io/spectre/tutorials/datatable_interoperability/sce_support.html

ghar1821 commented 1 month ago

The steps are largely still the same except you need to remove the with=F when transposing the data.frame (the t functions)