Analysis functionality

[mountainpenguin]

Needs:

• [ ] nuclear outlining (editable)
  • [x] hull method from too_lazy_to_click (1.1 * stddev + mean)
  • [x] background subtraction (from wild-type)
  • [x] editing
  • [ ] setting correct nuclear channel
  • [x] illumination correction
• [ ] timing information
• [x] px to um information
• [x] incorporation of wild-type cells from other experiments
• [ ] combination of multiple experiments (e.g. replicates)
• [x] retrieval of data:
  • [x] cell area
  • [x] time to mitosis
  • [x] total fluorescence (all channels)
  • [x] mean fluorescence (by cell area; all channels)
  • [x] nuclear fluorescence (all channels)
  • [x] mean nuclear fluorescence (by nuclear area; all channels)
  • [x] nuclear area
• cell-specific data:
  • [x] growth rate
  • [x] interdivision time
  • [x] birth_area, division_area
  • [ ] generation number (observed)

[mountainpenguin]

Superseded by #43