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ImperialCollegeLondon / covid19model

Code for modelling estimated deaths and cases for COVID19.
MIT License
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How to reproduce results / run the code? #3

Closed HughParsonage closed 4 years ago

HughParsonage commented 4 years ago

I applaud you for your work and for making the code available. That said, I'm not sure how to run the code. I infer in the below line that I'm supposed to run this from the command line with arguments (or at least that if no arguments are provided then base is run), but I'm not sure whether that's the right approach or if it is what arguments I should pass to Rscript.

https://github.com/ImperialCollegeLondon/covid19model/blob/144356c4dc487ed7f42fa86bc6f2210c6399ecc7/base.r#L21

There are other inputs that are apparently needed (like the environment variable PBS_JOBID), but I'm not sure what they do.

Can you provide one or two examples in the README.md?

Thanks again.

s-mishra commented 4 years ago

Hi there, thanks a lot for pointing this out. I have updated the readme now to make it relatively easy to run our code. Look at commit f379e92