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ImperialCollegeLondon / covid19model

Code for modelling estimated deaths and cases for COVID19.
MIT License
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theoretical predictions for R0 #40

Closed philipus closed 4 years ago

philipus commented 4 years ago

Where is the part in the Code to get the theoretical predictions for R0?

s-mishra commented 4 years ago

extract Rt from out/fit like out$Rt

philipus commented 4 years ago

apply((as.matrix(out$Rt[,1,])),2,median) for the intial R0?

gustavdelius commented 4 years ago

@philipus , for the initial R0 you should look in out$mu.

philipus commented 4 years ago

oh , I thought mu is the one from the fit to the data and not the theoretical one. Sorry that i am bothering you so heavily.

flaxter commented 4 years ago

mu is the parameter giving our estimate of the initial R0 for each country. It is inferred from the data. Can you clarify what you mean by "theoretical one"? Are you asking what prior we place on mu?

On Thu, Apr 9, 2020 at 6:47 PM Filip Floegel notifications@github.com wrote:

oh , I thought mu is the one from the fit to the data and not the theoretical one. Sorry that i am bothering you so heavily.

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philipus commented 4 years ago

Figure 18 in Report 13