Closed tinavisnovska closed 8 months ago
The issue here was that RNA sample was postprocessed but info about its existence was not filled in the InPreD_clinical_data_file
and it got resolved when the RNA sample info was added into the metadata file
The script crashes when both DNA and RNA samples are provided and InPreD_clinical_data_file does not exist.
A condition checking for InPreD_clinical_data_file existence could resolve the issue. It can be added somewhere nearby one of the following two locations:
line 349: definiton of get_RNA_ori_name line 1060: usage of get_RNA_ori_name