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InPreD / PRONTO

rePort geneRator fOr iNpred Tumor bOards
GNU General Public License v3.0
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add expected file names into a ChangeLog when they changed #9

Closed tinavisnovska closed 8 months ago

tinavisnovska commented 8 months ago

for example:

a file called ${DNA_SAMPLE_ID}_small_variant_table_forQC.tsv

It would be good to know about all files and file default names which are expected by the tool, especially the files which need to be created manually.

Also, it would be nice to have all fallbacks documented (as when small_variant_table_forQC.tsv is not present, small_variant_table.tsv is used automatically).

xiaoliz0 commented 8 months ago

PRONTO reads ${DNA_SAMPLE_ID}_small_variant_table.tsv if the file ${DNA_SAMPLE_ID}_small_variant_table_forQC.tsv does not exist in the post-processing result folder.