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IndexThePlanet / Logan

Logan Unitigs and Contigs
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Accessions not found? #5

Closed taltman closed 2 months ago

taltman commented 2 months ago

To whomever it may concern at the Logan Project,

I hope that this finds you well, and in good health. I have come across some SRA accessions that seem to not be in the S3 bucket. Is there a list of criteria by which one would be able to tell a priori if a given accession was processed by the Logan Project?

Here is how I queried:

# aws s3 cp s3://logan-pub/c/SRR26701885/SRR26701885.contigs.fa.zst . --no-sign-request
fatal error: An error occurred (404) when calling the HeadObject operation: Key "c/SRR26701885/SRR26701885.contigs.fa.zst" does not exist

Any pointers about what I might be doing wrong would be greatly appreciated!

Best regards,

~Tomer

taltman commented 2 months ago

Nevermind, I see that I selected datasets that were after the SRA freeze date used for the Logan Project.