search

IndrajeetPatil / ggstatsplot

Enhancing {ggplot2} plots with statistical analysis 📊📣
https://indrajeetpatil.github.io/ggstatsplot/
GNU General Public License v3.0
1.98k stars 184 forks source link

Compatibility with skimr 2.0 #323

Closed fmmattioni closed 4 years ago

fmmattioni commented 4 years ago

I am not quite sure the cause of this problem, but one of the recent commits of rlang caused skimr to break. If I try to:

devtools::install_github("ropensci/skimr")

I will get the following error:

> devtools::install_github("ropensci/skimr")
Downloading GitHub repo ropensci/skimr@master
✔  checking for file ‘/tmp/RtmpvwoCcq/remotes4f53add2705/ropensci-skimr-4a7a024/DESCRIPTION’ (415ms)
─  preparing ‘skimr’:
✔  checking DESCRIPTION meta-information ...
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  building ‘skimr_1.0.7.tar.gz’

Installing package into ‘/home/felipe/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
* installing *source* package ‘skimr’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘skimr’:
 .onLoad failed in loadNamespace() for 'skimr', details:
  call: NULL
  error: Internal error: Expected call in `quo_invert()`
Error: loading failed
Execution halted

To solve this issue, I have installed skimr 2.0 with:

devtools::install_github("ropensci/skimr", ref = "v2")

However, when I try to run ggstatsplot::grouped_ggwithinstats() I get the following error:

This package is currently not compatible with `skimr 2.0` package.
Error in groupedstats::grouped_summary(data = data, grouping.vars = { :
Session Info setting value version R version 3.6.1 (2019-07-05) os Ubuntu 19.04 system x86_64, linux-gnu ui RStudio language (EN) collate en_US.UTF-8 ctype en_US.UTF-8 tz Europe/Berlin date 2019-10-10 ─ Packages ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── package * version date lib source abind 1.4-5 2016-07-21 [3] CRAN (R 3.5.0) assertthat 0.2.1 2019-03-21 [1] CRAN (R 3.6.0) backports 1.1.5 2019-10-02 [1] CRAN (R 3.6.1) base64enc 0.1-3 2015-07-28 [3] CRAN (R 3.5.0) BayesFactor 0.9.12-4.2 2018-05-19 [1] CRAN (R 3.6.0) bayestestR 0.3.3 2019-10-10 [1] Github (easystats/bayestestR@594a2e7) boot 1.3-22 2019-04-26 [1] CRAN (R 3.6.0) bridgesampling 0.7-2 2019-07-21 [1] CRAN (R 3.6.1) Brobdingnag 1.2-6 2018-08-13 [1] CRAN (R 3.6.1) broom 0.5.2 2019-04-07 [1] CRAN (R 3.6.0) broom.mixed 0.2.4 2019-02-21 [1] CRAN (R 3.6.0) broomExtra 0.0.5 2019-08-19 [1] CRAN (R 3.6.1) callr 3.3.2 2019-09-22 [1] CRAN (R 3.6.1) car 3.0-3 2019-05-27 [1] CRAN (R 3.6.0) carData 3.0-2 2018-09-30 [1] CRAN (R 3.6.0) cellranger 1.1.0 2016-07-27 [1] CRAN (R 3.6.0) cli 1.1.0 2019-03-19 [1] CRAN (R 3.6.0) clipr 0.7.0 2019-07-23 [1] CRAN (R 3.6.1) cluster 2.1.0 2019-06-19 [4] CRAN (R 3.6.1) coda 0.19-3 2019-07-05 [1] CRAN (R 3.6.1) codetools 0.2-16 2018-12-24 [4] CRAN (R 3.6.0) coin 1.3-1 2019-08-28 [1] CRAN (R 3.6.1) colorspace 1.4-1 2019-03-18 [1] CRAN (R 3.6.0) cowplot 1.0.0 2019-07-11 [1] CRAN (R 3.6.1) crayon 1.3.4 2017-09-16 [3] CRAN (R 3.5.0) curl 4.2 2019-09-24 [1] CRAN (R 3.6.1) data.table 1.12.4 2019-10-03 [1] CRAN (R 3.6.1) DEoptimR 1.0-8 2016-11-19 [1] CRAN (R 3.6.0) desc 1.2.0 2018-05-01 [3] CRAN (R 3.5.0) DescTools 0.99.29 2019-09-26 [1] CRAN (R 3.6.1) devtools 2.2.1 2019-09-24 [1] CRAN (R 3.6.1) digest 0.6.21 2019-09-20 [1] CRAN (R 3.6.1) dplyr * 0.8.3.9000 2019-10-10 [1] Github (tidyverse/dplyr@dcfc1d1) ellipsis 0.3.0 2019-09-20 [1] CRAN (R 3.6.1) emmeans 1.4.1.009004 2019-10-08 [1] Github (rvlenth/emmeans@2852064) EMT 1.1 2013-01-29 [1] CRAN (R 3.6.0) estimability 1.3 2018-02-11 [1] CRAN (R 3.6.0) expm 0.999-4 2019-03-21 [1] CRAN (R 3.6.0) ez 4.4-0 2016-11-02 [1] CRAN (R 3.6.0) fansi 0.4.0 2018-10-05 [3] CRAN (R 3.5.1) fit.models 0.5-14 2017-04-06 [1] CRAN (R 3.6.0) forcats * 0.4.0 2019-02-17 [1] CRAN (R 3.6.0) foreign 0.8-72 2019-08-02 [4] CRAN (R 3.6.1) fs 1.3.1 2019-05-06 [1] CRAN (R 3.6.0) furrr 0.1.0 2018-05-16 [1] CRAN (R 3.6.1) future 1.14.0 2019-07-02 [1] CRAN (R 3.6.0) generics 0.0.2 2018-11-29 [1] CRAN (R 3.6.0) ggcorrplot 0.1.3 2019-05-19 [1] CRAN (R 3.6.0) ggExtra 0.9 2019-08-27 [1] CRAN (R 3.6.1) ggplot2 * 3.2.1 2019-08-10 [1] CRAN (R 3.6.1) ggrepel 0.8.1 2019-05-07 [1] CRAN (R 3.6.0) ggsignif 0.6.0 2019-08-08 [1] CRAN (R 3.6.1) ggstatsplot 0.1.2.9000 2019-10-08 [1] Github (IndrajeetPatil/ggstatsplot@499222d) globals 0.12.4 2018-10-11 [1] CRAN (R 3.6.0) glue 1.3.1 2019-03-12 [1] CRAN (R 3.6.0) gridExtra 2.3 2017-09-09 [1] CRAN (R 3.6.0) groupedstats 0.0.9 2019-08-28 [1] CRAN (R 3.6.1) gtable 0.3.0 2019-03-25 [1] CRAN (R 3.6.0) gtools 3.8.1 2018-06-26 [1] CRAN (R 3.6.0) haven 2.1.1 2019-07-04 [1] CRAN (R 3.6.1) hms 0.5.1 2019-08-23 [1] CRAN (R 3.6.1) htmltools 0.4.0 2019-10-04 [1] CRAN (R 3.6.1) httpuv 1.5.2.9000 2019-10-06 [1] Github (rstudio/httpuv@57e1d71) httr 1.4.1 2019-08-05 [1] CRAN (R 3.6.1) inline 0.3.15 2018-05-18 [1] CRAN (R 3.6.1) insight 0.5.0.9000 2019-10-06 [1] Github (easystats/insight@b806966) jmv 0.9.6.1 2019-04-22 [1] CRAN (R 3.6.0) jmvcore 1.0.0 2019-05-28 [1] CRAN (R 3.6.0) jsonlite 1.6 2018-12-07 [3] CRAN (R 3.5.1) knitr 1.25 2019-09-18 [1] CRAN (R 3.6.1) LaplacesDemon 16.1.1 2018-06-30 [1] CRAN (R 3.6.0) later 1.0.0 2019-10-04 [1] CRAN (R 3.6.1) lattice 0.20-38 2018-11-04 [4] CRAN (R 3.6.0) lazyeval 0.2.2 2019-03-15 [1] CRAN (R 3.6.0) libcoin 1.0-5 2019-08-27 [1] CRAN (R 3.6.1) lifecycle 0.1.0 2019-08-01 [1] CRAN (R 3.6.1) listenv 0.7.0 2018-01-21 [1] CRAN (R 3.6.0) lme4 1.1-21 2019-03-05 [1] CRAN (R 3.6.0) lmtest 0.9-37 2019-04-30 [1] CRAN (R 3.6.0) logspline 2.1.14 2019-10-04 [1] CRAN (R 3.6.1) loo 2.1.0 2019-03-13 [1] CRAN (R 3.6.1) lubridate 1.7.4 2018-04-11 [3] CRAN (R 3.5.1) magrittr 1.5 2014-11-22 [3] CRAN (R 3.5.0) MASS 7.3-51.4 2019-04-26 [4] CRAN (R 3.6.1) Matrix 1.2-17 2019-03-22 [4] CRAN (R 3.6.1) MatrixModels 0.4-1 2015-08-22 [1] CRAN (R 3.6.0) matrixStats 0.55.0 2019-09-07 [1] CRAN (R 3.6.1) mc2d 0.1-18 2017-03-06 [1] CRAN (R 3.6.0) mcmc 0.9-6 2019-03-10 [1] CRAN (R 3.6.0) MCMCpack 1.4-4 2018-09-14 [1] CRAN (R 3.6.0) memoise 1.1.0 2017-04-21 [3] CRAN (R 3.5.0) metaBMA 0.6.2 2019-09-16 [1] CRAN (R 3.6.1) metafor 2.1-0 2019-05-14 [1] CRAN (R 3.6.0) mgcv 1.8-29 2019-09-20 [4] CRAN (R 3.6.1) mime 0.7 2019-06-11 [1] CRAN (R 3.6.0) miniUI 0.1.1.1 2018-05-18 [3] CRAN (R 3.5.0) minpack.lm 1.2-1 2016-11-20 [1] CRAN (R 3.6.0) minqa 1.2.4 2014-10-09 [1] CRAN (R 3.6.0) mnormt 1.5-5 2016-10-15 [1] CRAN (R 3.6.0) modelr 0.1.5 2019-08-08 [1] CRAN (R 3.6.1) modeltools 0.2-22 2018-07-16 [1] CRAN (R 3.6.0) multcomp 1.4-10 2019-03-05 [1] CRAN (R 3.6.0) multcompView 0.1-7 2015-07-31 [1] CRAN (R 3.6.0) munsell 0.5.0 2018-06-12 [3] CRAN (R 3.5.0) mvtnorm 1.0-11 2019-06-19 [1] CRAN (R 3.6.0) nlme 3.1-141 2019-08-01 [4] CRAN (R 3.6.1) nloptr 1.2.1 2018-10-03 [1] CRAN (R 3.6.0) nortest 1.0-4 2015-07-30 [1] CRAN (R 3.6.0) openxlsx 4.1.0.1 2019-05-28 [1] CRAN (R 3.6.0) packrat 0.5.0 2018-11-14 [1] CRAN (R 3.6.0) pairwiseComparisons 0.1.1.9000 2019-10-06 [1] Github (IndrajeetPatil/pairwiseComparisons@7cf8e0e) paletteer 0.2.1 2019-02-13 [1] CRAN (R 3.6.0) parameters 0.2.1 2019-10-10 [1] Github (easystats/parameters@34bd9bf) pbapply 1.4-2 2019-08-31 [1] CRAN (R 3.6.1) pcaPP 1.9-73 2018-01-14 [1] CRAN (R 3.6.0) performance 0.3.0.9000 2019-10-07 [1] Github (easystats/performance@fc1a19f) pillar 1.4.2 2019-06-29 [1] CRAN (R 3.6.0) pkgbuild 1.0.6 2019-10-09 [1] CRAN (R 3.6.1) pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 3.6.1) pkgload 1.0.2 2018-10-29 [1] CRAN (R 3.6.0) plyr 1.8.4 2016-06-08 [3] CRAN (R 3.5.0) prettyunits 1.0.2 2015-07-13 [3] CRAN (R 3.5.0) processx 3.4.1 2019-07-18 [1] CRAN (R 3.6.1) promises 1.1.0.9000 2019-10-06 [1] Github (rstudio/promises@8222809) ps 1.3.0 2018-12-21 [1] CRAN (R 3.6.0) psych 1.8.12 2019-01-12 [1] CRAN (R 3.6.0) purrr * 0.3.2 2019-03-15 [1] CRAN (R 3.6.0) quantreg 5.51 2019-08-07 [1] CRAN (R 3.6.1) R6 2.4.0 2019-02-14 [3] CRAN (R 3.5.2) rap 0.0.0.9001 2019-06-06 [1] Github (romainfrancois/rap@ff8d735) rcompanion 2.3.7 2019-09-29 [1] CRAN (R 3.6.1) Rcpp 1.0.2 2019-07-25 [1] CRAN (R 3.6.1) readr * 1.3.1 2018-12-21 [1] CRAN (R 3.6.0) readxl 1.3.1 2019-03-13 [1] CRAN (R 3.6.0) remotes 2.1.0 2019-06-24 [1] CRAN (R 3.6.0) repr 1.0.1 2019-05-14 [1] CRAN (R 3.6.1) reshape 0.8.8 2018-10-23 [1] CRAN (R 3.6.0) reshape2 1.4.3 2017-12-11 [3] CRAN (R 3.5.0) rio 0.5.16 2018-11-26 [1] CRAN (R 3.6.0) rjson 0.2.20 2018-06-08 [1] CRAN (R 3.6.0) rlang 0.4.0.9004 2019-10-10 [1] Github (r-lib/rlang@a7d8177) robust 0.4-18.1 2019-07-02 [1] CRAN (R 3.6.0) robustbase 0.93-5 2019-05-12 [1] CRAN (R 3.6.0) rprojroot 1.3-2 2018-01-03 [3] CRAN (R 3.5.0) rrcov 1.4-7 2018-11-15 [1] CRAN (R 3.6.0) rsample 0.0.5 2019-07-12 [1] CRAN (R 3.6.1) rstan 2.19.2 2019-07-09 [1] CRAN (R 3.6.1) rstantools 2.0.0 2019-09-15 [1] CRAN (R 3.6.1) rstudioapi 0.10.0-9002 2019-10-10 [1] Github (rstudio/rstudioapi@6e340b4) rvest 0.3.4 2019-05-15 [1] CRAN (R 3.6.0) sandwich 2.5-1 2019-04-06 [1] CRAN (R 3.6.0) scales 1.0.0 2018-08-09 [3] CRAN (R 3.5.1) segmented 1.0-0 2019-06-17 [1] CRAN (R 3.6.0) sessioninfo * 1.1.1 2018-11-05 [1] CRAN (R 3.6.0) shiny 1.3.2 2019-04-22 [1] CRAN (R 3.6.0) sjlabelled 1.1.1 2019-09-13 [1] CRAN (R 3.6.1) sjmisc 2.8.2 2019-09-24 [1] CRAN (R 3.6.1) sjstats 0.17.6 2019-09-08 [1] CRAN (R 3.6.1) skimr 2.0 2019-10-10 [1] Github (ropensci/skimr@a41b971) SparseM 1.77 2017-04-23 [1] CRAN (R 3.6.0) StanHeaders 2.19.0 2019-09-07 [1] CRAN (R 3.6.1) statsExpressions 0.1.1 2019-08-28 [1] CRAN (R 3.6.1) stringi 1.4.3 2019-03-12 [1] CRAN (R 3.6.0) stringr * 1.4.0 2019-02-10 [3] CRAN (R 3.5.2) survival 2.44-1.1 2019-04-01 [4] CRAN (R 3.6.1) testthat 2.2.1 2019-07-25 [1] CRAN (R 3.6.1) TH.data 1.0-10 2019-01-21 [1] CRAN (R 3.6.0) tibble * 2.1.3 2019-06-06 [1] CRAN (R 3.6.0) tidyr * 1.0.0 2019-09-11 [1] CRAN (R 3.6.1) tidyselect 0.2.5 2018-10-11 [3] CRAN (R 3.5.1) tidyverse * 1.2.1 2017-11-14 [1] CRAN (R 3.6.0) TMB 1.7.15 2018-11-09 [1] CRAN (R 3.6.0) usethis 1.5.1 2019-07-04 [1] CRAN (R 3.6.1) utf8 1.1.4 2018-05-24 [3] CRAN (R 3.5.0) vctrs 0.2.0.9005 2019-10-10 [1] Github (r-lib/vctrs@1a96680) withr 2.1.2 2018-03-15 [3] CRAN (R 3.5.0) WRS2 1.0-0 2019-06-06 [1] CRAN (R 3.6.0) xfun 0.10 2019-10-01 [1] CRAN (R 3.6.1) xml2 1.2.2 2019-08-09 [1] CRAN (R 3.6.1) xtable 1.8-4 2019-04-21 [1] CRAN (R 3.6.0) zeallot 0.1.0 2018-01-28 [1] CRAN (R 3.6.0) zip 2.0.4 2019-09-01 [1] CRAN (R 3.6.1) zoo 1.8-6 2019-05-28 [1] CRAN (R 3.6.0)
IndrajeetPatil commented 4 years ago

Yes, ggstatsplot currently doesn't work with the development version of skimr. For a while, I tried to keep it in sync with the changes being made to skimr, but got tired of it after a while.

Your current options are- Use CRAN version of skimr or set mean.plotting = FALSE when you use ggbetweenstats or ggwithinstats functions.

fmmattioni commented 4 years ago

Sounds good! Thank you!!