IndrajeetPatil
commented
4 years ago Doesn't seem to be a ggsignif issue. The 80-90 combo is present here.
Minimal reprex:
# setup
set.seed(123)
library(tidyverse)
options(tibble.print_max = Inf)
# dataframe
df <- structure(list(
x = c(
30, 40, 50, 60, 70, 80, 90, 30, 40, 50,
60, 70, 80, 90, 30, 40, 50, 60, 70, 80, 90, 30, 40, 50, 60, 70,
80, 90, 30, 40, 50, 60, 70, 80, 90
),
Participant = c(
"FH2", "FH2",
"FH2", "FH2", "FH2", "FH2", "FH2", "ZW", "ZW", "ZW", "ZW", "ZW",
"ZW", "ZW", "KS", "KS", "KS", "KS", "KS", "KS", "KS", "CL", "CL",
"CL", "CL", "CL", "CL", "CL", "AG", "AG", "AG", "AG", "AG", "AG",
"AG"
),
Method = c(
2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2
),
y = c(
2571.25, 2688.003333, 2779.363333, 2832.046667,
3050.72, 3255.553333, 3327.173667, 1766.296667, 2107.890333,
2391.7, 2569.24, 2680.22, 2807.59, 2807.953333, 2078.734,
2414.366667, 2583.27, 2923.253333, 3085.96, 3094.003333,
3121.49, 2824.990667, 2716.429667, 2844.323333, 3124.713333,
3252.863333, 3424.24, 3674.463333, 2401.996667, 2719.046667,
2712.99, 2951.965667, 3046.526667, 3100.902667, 3195.331333
)
),
class = c("spec_tbl_df", "tbl_df", "tbl", "data.frame"),
row.names = c(NA, -35L),
spec = structure(list(
cols = list(
x = structure(list(), class = c("collector_double", "collector")),
Participant = structure(list(), class = c(
"collector_character",
"collector"
)),
Method = structure(list(), class = c(
"collector_double",
"collector"
)),
y = structure(list(), class = c(
"collector_double",
"collector"
))
),
default = structure(list(), class = c(
"collector_guess",
"collector"
)), skip = 1
),
class = "col_spec"
)
)
library(ggplot2)
library(ggsignif)
df$x <- as.character(df$x)
combos <- utils::combn(unique(df$x), 2, simplify = FALSE)
ggplot(df, aes(x, y)) +
geom_boxplot() +
geom_signif(comparisons = combos, step_increase = 0.2)
Created on 2020-02-19 by the reprex package (v0.3.0)
The comparison between
80and90is missing.You can see it in the
pairwiseComparisonsoutput, and yet it is not present in thegeom_ggsignifdata.So is this
ggstatsplotorggsignifissue?Created on 2020-02-19 by the reprex package (v0.3.0)
Session info
``` r devtools::session_info() #> ─ Session info ─────────────────────────────────────────────────────────────── #> setting value #> version R version 3.6.2 (2019-12-12) #> os macOS Mojave 10.14.6 #> system x86_64, darwin15.6.0 #> ui X11 #> language (EN) #> collate en_US.UTF-8 #> ctype en_US.UTF-8 #> tz Europe/Berlin #> date 2020-02-19 #> #> ─ Packages ─────────────────────────────────────────────────────────────────── #> package * version date lib #> abind 1.4-5 2016-07-21 [1] #> assertthat 0.2.1 2019-03-21 [1] #> backports 1.1.5 2019-10-02 [1] #> base64enc 0.1-3 2015-07-28 [1] #> BayesFactor 0.9.12-4.2 2018-05-19 [1] #> bayestestR 0.5.2 2020-02-13 [1] #> bbmle 1.0.23.1 2020-02-03 [1] #> bdsmatrix 1.3-4 2020-01-13 [1] #> boot 1.3-24 2019-12-20 [1] #> bridgesampling 0.8-1 2020-01-16 [1] #> Brobdingnag 1.2-6 2018-08-13 [1] #> broom 0.5.4 2020-01-27 [1] #> broom.mixed 0.2.4 2019-02-21 [1] #> broomExtra 1.0.1 2020-01-07 [1] #> callr 3.4.2 2020-02-12 [1] #> car 3.0-6 2019-12-23 [1] #> carData 3.0-3 2019-11-16 [1] #> cellranger 1.1.0 2016-07-27 [1] #> cli 2.0.1 2020-01-08 [1] #> cluster 2.1.0 2019-06-19 [2] #> coda 0.19-3 2019-07-05 [1] #> codetools 0.2-16 2018-12-24 [2] #> coin 1.3-1 2019-08-28 [1] #> colorspace 1.4-1 2019-03-18 [1] #> cowplot 1.0.0 2019-07-11 [1] #> crayon 1.3.4 2017-09-16 [1] #> curl 4.3 2019-12-02 [1] #> data.table 1.12.8 2019-12-09 [1] #> DBI 1.1.0 2019-12-15 [1] #> dbplyr 1.4.2 2019-06-17 [1] #> desc 1.2.0 2018-05-01 [1] #> DescTools 0.99.32 2020-01-17 [1] #> devtools 2.2.2 2020-02-17 [1] #> dichromat 2.0-0 2013-01-24 [1] #> digest 0.6.24 2020-02-12 [1] #> dplyr * 0.8.4 2020-01-31 [1] #> effectsize 0.1.2 2020-02-13 [1] #> ellipsis 0.3.0 2019-09-20 [1] #> emmeans 1.4.4 2020-01-28 [1] #> EMT 1.1 2013-01-29 [1] #> estimability 1.3 2018-02-11 [1] #> evaluate 0.14 2019-05-28 [1] #> expm 0.999-4 2019-03-21 [1] #> ez 4.4-0 2016-11-02 [1] #> fansi 0.4.1 2020-01-08 [1] #> farver 2.0.3 2020-01-16 [1] #> fastGHQuad 1.0 2018-09-30 [1] #> fastmap 1.0.1 2019-10-08 [1] #> forcats * 0.4.0 2019-02-17 [1] #> foreign 0.8-72 2019-08-02 [2] #> fs 1.3.1 2019-05-06 [1] #> generics 0.0.2 2018-11-29 [1] #> ggcorrplot 0.1.3 2019-05-19 [1] #> ggExtra 0.9 2019-08-27 [1] #> ggplot2 * 3.3.0.9000 2020-02-18 [1] #> ggrepel 0.8.1 2019-05-07 [1] #> ggsignif 0.6.0 2019-08-08 [1] #> ggstatsplot 0.3.0.9000 2020-02-18 [1] #> glue 1.3.1 2019-03-12 [1] #> gridExtra 2.3 2017-09-09 [1] #> groupedstats 0.1.1 2020-01-14 [1] #> gtable 0.3.0 2019-03-25 [1] #> gtools 3.8.1 2018-06-26 [1] #> haven 2.2.0 2019-11-08 [1] #> highr 0.8 2019-03-20 [1] #> hms 0.5.3 2020-01-08 [1] #> htmltools 0.4.0 2019-10-04 [1] #> httpuv 1.5.2 2019-09-11 [1] #> httr 1.4.1 2019-08-05 [1] #> inline 0.3.15 2018-05-18 [1] #> insight 0.8.1.1 2020-02-13 [1] #> ipmisc 1.1.0 2020-02-09 [1] #> jcolors 0.0.4 2019-05-22 [1] #> jmv 1.2.5 2020-02-17 [1] #> jmvcore 1.2.5 2020-02-05 [1] #> jsonlite 1.6.1 2020-02-02 [1] #> knitr 1.28 2020-02-06 [1] #> labeling 0.3 2014-08-23 [1] #> LaplacesDemon 16.1.4 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