confidence intervals for mean are not consistent across contexts

IndrajeetPatil commented 4 years ago

# without
set.seed(123)
ggstatsplot::ggbetweenstats(
  data = ToothGrowth,
  x = supp,
  y = len,
  mean.ci = TRUE,
  results.subtitle = FALSE,
  bf.message = FALSE,
  k = 3
)

# with
set.seed(123)
ggstatsplot::ggbetweenstats(
  data = ToothGrowth,
  x = supp,
  y = len,
  mean.ci = TRUE,
  k = 3
)

^{Created on 2020-10-30 by the reprex package (v0.3.0.9001)}

IndrajeetPatil commented 4 years ago

set.seed(123)
ggstatsplot:::mean_labeller(
  data = ToothGrowth,
  x = supp,
  y = len,
  mean.ci = TRUE
)$label

#> [1] "list(~italic(widehat(mu))==20.663,CI[95*'%']*'['*18.247,22.808*']')"
#> [2] "list(~italic(widehat(mu))==16.963,CI[95*'%']*'['*14.143,19.884*']')"

set.seed(123)
ggstatsplot:::mean_labeller(
  data = ToothGrowth,
  x = supp,
  y = len,
  mean.ci = TRUE
)$label

#> [1] "list(~italic(widehat(mu))==20.663,CI[95*'%']*'['*18.247,22.808*']')"
#> [2] "list(~italic(widehat(mu))==16.963,CI[95*'%']*'['*14.143,19.884*']')"

^{Created on 2020-10-30 by the reprex package (v0.3.0.9001)}

IndrajeetPatil commented 3 years ago

Seems like this has something to do with bf.message = TRUE, because the difference disappears here:

# without
set.seed(123)
ggstatsplot::ggbetweenstats(
  data = ToothGrowth,
  x = supp,
  y = len,
  plot.type = "box",
  mean.ci = TRUE,
  results.subtitle = FALSE,
  bf.message = FALSE,
  k = 3
)


# with
set.seed(123)
ggstatsplot::ggbetweenstats(
  data = ToothGrowth,
  x = supp,
  y = len,
  plot.type = "box",
  mean.ci = TRUE,
  bf.message = FALSE,
  k = 3
)

^{Created on 2020-12-10 by the reprex package (v0.3.0)}

Session info

``` r devtools::session_info() #> ─ Session info ─────────────────────────────────────────────────────────────── #> setting value #> version R version 4.0.3 (2020-10-10) #> os macOS Mojave 10.14.6 #> system x86_64, darwin17.0 #> ui X11 #> language (EN) #> collate en_US.UTF-8 #> ctype en_US.UTF-8 #> tz Europe/Berlin #> date 2020-12-10 #> #> ─ Packages ─────────────────────────────────────────────────────────────────── #> package * version date lib source #> abind 1.4-5 2016-07-21 [1] CRAN (R 4.0.2) #> assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.0.2) #> BayesFactor 0.9.12-4.2 2018-05-19 [1] CRAN (R 4.0.2) #> bayestestR 0.8.0 2020-12-05 [1] CRAN (R 4.0.3) #> bbmle 1.0.23.1 2020-02-03 [1] CRAN (R 4.0.2) #> bdsmatrix 1.3-4 2020-01-13 [1] CRAN (R 4.0.2) #> boot 1.3-25 2020-04-26 [2] CRAN (R 4.0.3) #> bridgesampling 1.0-0 2020-02-26 [1] CRAN (R 4.0.2) #> Brobdingnag 1.2-6 2018-08-13 [1] CRAN (R 4.0.2) #> BWStest 0.2.2 2018-10-18 [1] CRAN (R 4.0.2) #> callr 3.5.1 2020-10-13 [1] CRAN (R 4.0.2) #> car 3.0-10 2020-09-29 [1] CRAN (R 4.0.2) #> carData 3.0-4 2020-05-22 [1] CRAN (R 4.0.2) #> cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.0.2) #> class 7.3-17 2020-04-26 [2] CRAN (R 4.0.3) #> cli 2.2.0 2020-11-20 [1] CRAN (R 4.0.3) #> coda 0.19-4 2020-09-30 [1] CRAN (R 4.0.2) #> codetools 0.2-16 2018-12-24 [2] CRAN (R 4.0.3) #> coin 1.3-1 2019-08-28 [1] CRAN (R 4.0.2) #> colorspace 2.0-0 2020-11-11 [1] CRAN (R 4.0.2) #> correlation 0.5.0 2020-12-02 [1] CRAN (R 4.0.3) #> cowplot 1.1.0 2020-09-08 [1] CRAN (R 4.0.2) #> crayon 1.3.4 2017-09-16 [1] CRAN (R 4.0.2) #> curl 4.3 2019-12-02 [1] CRAN (R 4.0.1) #> data.table 1.13.4 2020-12-08 [1] CRAN (R 4.0.3) #> desc 1.2.0 2018-05-01 [1] CRAN (R 4.0.2) #> DescTools 0.99.39 2020-12-07 [1] CRAN (R 4.0.2) #> devtools 2.3.2 2020-09-18 [1] CRAN (R 4.0.2) #> digest 0.6.27 2020-10-24 [1] CRAN (R 4.0.2) #> dplyr 1.0.2 2020-08-18 [1] CRAN (R 4.0.2) #> e1071 1.7-4 2020-10-14 [1] CRAN (R 4.0.2) #> effectsize 0.4.1 2020-12-07 [1] CRAN (R 4.0.3) #> ellipsis 0.3.1 2020-05-15 [1] CRAN (R 4.0.2) #> EMT 1.1 2013-01-29 [1] CRAN (R 4.0.2) #> evaluate 0.14 2019-05-28 [1] CRAN (R 4.0.1) #> Exact 2.1 2020-10-02 [1] CRAN (R 4.0.2) #> expm 0.999-5 2020-07-20 [1] CRAN (R 4.0.2) #> ez 4.4-0 2016-11-02 [1] CRAN (R 4.0.2) #> fansi 0.4.1 2020-01-08 [1] CRAN (R 4.0.2) #> farver 2.0.3 2020-01-16 [1] CRAN (R 4.0.2) #> fastGHQuad 1.0 2018-09-30 [1] CRAN (R 4.0.2) #> fastmap 1.0.1 2019-10-08 [1] CRAN (R 4.0.2) #> forcats 0.5.0 2020-03-01 [1] CRAN (R 4.0.2) #> foreign 0.8-80 2020-05-24 [2] CRAN (R 4.0.3) #> fs 1.5.0 2020-07-31 [1] CRAN (R 4.0.2) #> generics 0.1.0 2020-10-31 [1] CRAN (R 4.0.2) #> ggcorrplot 0.1.3 2019-05-19 [1] CRAN (R 4.0.2) #> ggExtra 0.9 2019-08-27 [1] CRAN (R 4.0.2) #> ggplot2 3.3.2 2020-06-19 [1] CRAN (R 4.0.2) #> ggrepel 0.8.2 2020-03-08 [1] CRAN (R 4.0.2) #> ggsignif 0.6.0 2019-08-08 [1] CRAN (R 4.0.2) #> ggstatsplot 0.6.6 2020-12-03 [1] CRAN (R 4.0.3) #> gld 2.6.2 2020-01-08 [1] CRAN (R 4.0.2) #> glue 1.4.2 2020-08-27 [1] CRAN (R 4.0.2) #> 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CRAN (R 4.0.3) #> multcompView 0.1-8 2019-12-19 [1] CRAN (R 4.0.2) #> munsell 0.5.0 2018-06-12 [1] CRAN (R 4.0.2) #> mvtnorm 1.1-1 2020-06-09 [1] CRAN (R 4.0.2) #> nlme 3.1-149 2020-08-23 [2] CRAN (R 4.0.3) #> nloptr 1.2.2.2 2020-07-02 [1] CRAN (R 4.0.2) #> nortest 1.0-4 2015-07-30 [1] CRAN (R 4.0.2) #> numDeriv 2016.8-1.1 2019-06-06 [1] CRAN (R 4.0.2) #> openxlsx 4.2.3 2020-10-27 [1] CRAN (R 4.0.2) #> pairwiseComparisons 3.1.1 2020-12-03 [1] CRAN (R 4.0.3) #> paletteer 1.2.0 2020-06-07 [1] CRAN (R 4.0.2) #> parameters 0.10.1 2020-12-08 [1] CRAN (R 4.0.3) #> pbapply 1.4-3 2020-08-18 [1] CRAN (R 4.0.2) #> performance 0.6.1 2020-12-09 [1] CRAN (R 4.0.3) #> pillar 1.4.7 2020-11-20 [1] CRAN (R 4.0.3) #> pkgbuild 1.1.0 2020-07-13 [1] CRAN (R 4.0.2) #> pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.0.2) #> pkgload 1.1.0 2020-05-29 [1] CRAN (R 4.0.2) #> plyr 1.8.6 2020-03-03 [1] CRAN (R 4.0.2) #> PMCMRplus 1.7.1 2020-11-30 [1] CRAN (R 4.0.2) #> prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.0.2) #> prismatic 0.2.0 2019-12-01 [1] CRAN (R 4.0.2) #> processx 3.4.5 2020-11-30 [1] CRAN (R 4.0.3) #> promises 1.1.1 2020-06-09 [1] CRAN (R 4.0.2) #> ps 1.5.0 2020-12-05 [1] CRAN (R 4.0.3) #> purrr 0.3.4 2020-04-17 [1] CRAN (R 4.0.2) #> R6 2.5.0 2020-10-28 [1] CRAN (R 4.0.2) #> rcompanion 2.3.26 2020-11-05 [1] CRAN (R 4.0.2) #> Rcpp 1.0.5 2020-07-06 [1] CRAN (R 4.0.2) #> RcppParallel 5.0.2 2020-06-24 [1] CRAN (R 4.0.2) #> readxl 1.3.1 2019-03-13 [1] CRAN (R 4.0.2) #> rematch2 2.1.2 2020-05-01 [1] CRAN (R 4.0.2) #> remotes 2.2.0 2020-07-21 [1] CRAN (R 4.0.2) #> reshape 0.8.8 2018-10-23 [1] CRAN (R 4.0.2) #> reshape2 1.4.4 2020-04-09 [1] CRAN (R 4.0.2) #> rio 0.5.16 2018-11-26 [1] CRAN (R 4.0.2) #> rlang 0.4.9 2020-11-26 [1] CRAN (R 4.0.3) #> rmarkdown 2.5 2020-10-21 [1] CRAN (R 4.0.3) #> Rmpfr 0.8-2 2020-11-11 [1] CRAN (R 4.0.2) #> rootSolve 1.8.2.1 2020-04-27 [1] CRAN (R 4.0.2) #> rprojroot 2.0.2 2020-11-15 [1] CRAN (R 4.0.3) #> rstan 2.21.2 2020-07-27 [1] CRAN (R 4.0.3) #> rstantools 2.1.1 2020-07-06 [1] CRAN (R 4.0.2) #> rstudioapi 0.13 2020-11-12 [1] CRAN (R 4.0.3) #> sandwich 3.0-0 2020-10-02 [1] CRAN (R 4.0.2) #> scales 1.1.1 2020-05-11 [1] CRAN (R 4.0.2) #> sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 4.0.2) #> shiny 1.5.0 2020-06-23 [1] CRAN (R 4.0.2) #> StanHeaders 2.21.0-6 2020-08-16 [1] CRAN (R 4.0.2) #> statmod 1.4.35 2020-10-19 [1] CRAN (R 4.0.2) #> statsExpressions 0.6.2 2020-12-08 [1] CRAN (R 4.0.3) #> stringi 1.5.3 2020-09-09 [1] CRAN (R 4.0.2) #> stringr 1.4.0 2019-02-10 [1] CRAN (R 4.0.2) #> SuppDists 1.1-9.5 2020-01-18 [1] CRAN (R 4.0.2) #> survival 3.2-7 2020-09-28 [2] CRAN (R 4.0.3) #> testthat 3.0.0 2020-10-31 [1] CRAN (R 4.0.2) #> TH.data 1.0-10 2019-01-21 [1] CRAN (R 4.0.2) #> tibble 3.0.4 2020-10-12 [1] CRAN (R 4.0.2) #> tidyBF 0.4.2 2020-12-08 [1] CRAN (R 4.0.3) #> tidyr 1.1.2 2020-08-27 [1] CRAN (R 4.0.2) #> tidyselect 1.1.0 2020-05-11 [1] CRAN (R 4.0.2) #> usethis 1.6.3 2020-09-17 [1] CRAN (R 4.0.2) #> V8 3.4.0 2020-11-04 [1] CRAN (R 4.0.2) #> vctrs 0.3.5 2020-11-17 [1] CRAN (R 4.0.3) #> withr 2.3.0 2020-09-22 [1] CRAN (R 4.0.2) #> WRS2 1.1-0 2020-06-19 [1] CRAN (R 4.0.2) #> xfun 0.19 2020-10-30 [1] CRAN (R 4.0.2) #> xml2 1.3.2 2020-04-23 [1] CRAN (R 4.0.2) #> xtable 1.8-4 2019-04-21 [1] CRAN (R 4.0.2) #> yaml 2.2.1 2020-02-01 [1] CRAN (R 4.0.2) #> zeallot 0.1.0 2018-01-28 [1] CRAN (R 4.0.2) #> zip 2.1.1 2020-08-27 [1] CRAN (R 4.0.2) #> zoo 1.8-8 2020-05-02 [1] CRAN (R 4.0.2) #> #> [1] /Users/patil/Library/R/4.0/library #> [2] /Library/Frameworks/R.framework/Versions/4.0/Resources/library ```

IndrajeetPatil commented 3 years ago

Never mind.

# without
set.seed(123)
ggstatsplot::ggbetweenstats(
  data = ToothGrowth,
  x = supp,
  y = len,
  type = "np",
  plot.type = "box",
  mean.ci = TRUE,
  results.subtitle = FALSE,
  k = 3
)


# with
set.seed(123)
ggstatsplot::ggbetweenstats(
  data = ToothGrowth,
  x = supp,
  y = len,
  type = "np",
  plot.type = "box",
  mean.ci = TRUE,
  k = 3
)

^{Created on 2020-12-10 by the reprex package (v0.3.0)}

Session info

``` r devtools::session_info() #> ─ Session info ─────────────────────────────────────────────────────────────── #> setting value #> version R version 4.0.3 (2020-10-10) #> os macOS Mojave 10.14.6 #> system x86_64, darwin17.0 #> ui X11 #> language (EN) #> collate en_US.UTF-8 #> ctype en_US.UTF-8 #> tz Europe/Berlin #> date 2020-12-10 #> #> ─ Packages ─────────────────────────────────────────────────────────────────── #> package * version date lib source #> abind 1.4-5 2016-07-21 [1] CRAN (R 4.0.2) #> assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.0.2) #> BayesFactor 0.9.12-4.2 2018-05-19 [1] CRAN (R 4.0.2) #> bayestestR 0.8.0 2020-12-05 [1] CRAN (R 4.0.3) #> bbmle 1.0.23.1 2020-02-03 [1] CRAN (R 4.0.2) #> bdsmatrix 1.3-4 2020-01-13 [1] CRAN (R 4.0.2) #> boot 1.3-25 2020-04-26 [2] CRAN (R 4.0.3) #> bridgesampling 1.0-0 2020-02-26 [1] CRAN (R 4.0.2) #> Brobdingnag 1.2-6 2018-08-13 [1] CRAN (R 4.0.2) #> BWStest 0.2.2 2018-10-18 [1] CRAN (R 4.0.2) #> callr 3.5.1 2020-10-13 [1] CRAN (R 4.0.2) #> car 3.0-10 2020-09-29 [1] CRAN (R 4.0.2) #> carData 3.0-4 2020-05-22 [1] CRAN (R 4.0.2) #> cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.0.2) #> class 7.3-17 2020-04-26 [2] CRAN (R 4.0.3) #> cli 2.2.0 2020-11-20 [1] CRAN (R 4.0.3) #> coda 0.19-4 2020-09-30 [1] CRAN (R 4.0.2) #> codetools 0.2-16 2018-12-24 [2] CRAN (R 4.0.3) #> coin 1.3-1 2019-08-28 [1] CRAN (R 4.0.2) #> colorspace 2.0-0 2020-11-11 [1] CRAN (R 4.0.2) #> correlation 0.5.0 2020-12-02 [1] CRAN (R 4.0.3) #> cowplot 1.1.0 2020-09-08 [1] CRAN (R 4.0.2) #> crayon 1.3.4 2017-09-16 [1] CRAN (R 4.0.2) #> curl 4.3 2019-12-02 [1] CRAN (R 4.0.1) #> data.table 1.13.4 2020-12-08 [1] CRAN (R 4.0.3) #> desc 1.2.0 2018-05-01 [1] CRAN (R 4.0.2) #> DescTools 0.99.39 2020-12-07 [1] CRAN (R 4.0.2) #> devtools 2.3.2 2020-09-18 [1] CRAN (R 4.0.2) #> digest 0.6.27 2020-10-24 [1] CRAN (R 4.0.2) #> dplyr 1.0.2 2020-08-18 [1] CRAN (R 4.0.2) #> e1071 1.7-4 2020-10-14 [1] CRAN (R 4.0.2) #> effectsize 0.4.1 2020-12-07 [1] CRAN (R 4.0.3) #> ellipsis 0.3.1 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IndrajeetPatil commented 3 years ago

The whole CI functionality was retired in https://github.com/IndrajeetPatil/ggstatsplot/commit/dbf1fd7f30b889275dae0ef4fc5784f85a311d65, so this is no longer a valid issue.

IndrajeetPatil / ggstatsplot

confidence intervals for mean are not consistent across contexts #467