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InformaticsMatters / squonk

Squonk platform and computational notebook
Apache License 2.0
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ChemAxon cells not working in Kubernetes deployment #134

Closed alanbchristie closed 3 years ago

alanbchristie commented 3 years ago

The ChemAxon license file was not being installed in the ChemServices container and LogP (CXN) cells fail indicating a license exception. Various attempts to resolve the problem and its location (environment driven and being placed in the /home/tomcat/.chemaxon directory) all result in the same error.

So the license file is mounted into the latest image 0.4.0-rc.6 (using a ConfigMap) but the LogP (CXN) cell continues to fail.

alanbchristie commented 3 years ago

This has be caused by using RDKit base images that install Java 11. By reverting to a Java 8 RDKit base image everything works. Release 0.4.0-rc.7 is working with the following base image tag: -