[51PW] Pipeline reproduction (FSL - deriv)

[bclenet]

Softwares

FSL

Input data

derivatives (fMRIprep)

Additional context

Other steps of preprocessing, from the fMRIprep data:

• intensity normalization
• smoothing

List of tasks

Please tick the boxes below once the corresponding task is finished. :+1:

• [x] :ok_hand: A maintainer of the project approved the issue, by assigning a :checkered_flag:status: ready for dev label to it.
• [x] :deciduous_tree: Create a branch on your fork to start the reproduction.
• [x] :sunrise: Create a file team_{team_id}.py inside the narps_open/pipelines/ directory. You can use a file inside narps_open/pipelines/templates as a template if needed.
• [x] :inbox_tray: Create a pull request as soon as you completed the previous task.
• [x] :brain: Write the code for the pipeline, using Nipype and the file architecture described in docs/pipelines.md.
• [x] :blue_book: Make sure your code is documented enough.
• [x] :snake: Make sure your code is explicit and conforms with PEP8.
• [x] :microscope: Create tests for your pipeline. You can use files in tests/pipelines/test_team_* as examples.
• [ ] :microscope: Make sure your code passes all the tests you created (see docs/testing.md).

[bclenet]

The current code allows the following correlation values :

Team	Number of subjects	Test status	Correlation values
51PW	20	failure	[0.33, 0.31, 0.38, 0.31, 0.28, 0.12, 0.28, 0.12, 0.04]
51PW	40	failure	[0.45, 0.41, 0.53, 0.41, 0.42, 0.20, 0.42, 0.20, -0.15]
51PW	60	failure	[0.48, 0.46, 0.56, 0.46, 0.51, 0.22, 0.51, 0.22, 0.13]
51PW	80	failure	[0.51, 0.51, 0.60, 0.51, 0.55, 0.27, 0.55, 0.27, -0.06]
51PW	108	failure	[0.57, 0.55, 0.67, 0.55, 0.59, 0.31, 0.59, 0.31, -0.01]

[cmaumet]

Discussed w/ @bclenet today: I need to look at the design matrix and compare with the description provided by the team