[X19V] Pipeline reproduction (FSL - deriv)

[bclenet]

Softwares

FSL

Input data

derivatives (fMRIprep)

Additional context

Needs to be refactored.

List of tasks

Please tick the boxes below once the corresponding task is finished. :+1:

• [x] :ok_hand: A maintainer of the project approved the issue, by assigning a :checkered_flag:status: ready for dev label to it.
• [x] :deciduous_tree: Create a branch on your fork to start the reproduction.
• [x] :sunrise: Create a file team_{team_id}.py inside the narps_open/pipelines/ directory. You can use a file inside narps_open/pipelines/templates as a template if needed.
• [x] :inbox_tray: Create a pull request as soon as you completed the previous task.
• [x] :brain: Write the code for the pipeline, using Nipype and the file architecture described in docs/pipelines.md.
• [x] :blue_book: Make sure your code is documented enough.
• [x] :snake: Make sure your code is explicit and conforms with PEP8.
• [x] :microscope: Create tests for your pipeline. You can use files in tests/pipelines/test_team_* as examples.
• [x] :microscope: Make sure your code passes all the tests you created (see docs/testing.md).

[bclenet]

First tests provide the following results :

Team	Number of subjects	Test status	Correlation values
X19V	40 subjects	failure	[0.77, 0.66, 0.77, 0.66, 0.71, 0.54, 0.71, 0.54, -0.17]

[bclenet]

Final correlation results

Team	Number of subjects	Test status	Correlation values
X19V	20 subjects	failure	[0.64, 0.47, 0.64, 0.47, 0.53, 0.42, 0.53, 0.42, 0.1]
X19V	40 subjects	failure	[0.77, 0.66, 0.77, 0.66, 0.71, 0.54, 0.71, 0.54, -0.17]
X19V	60 subjects	failure	0.81, 0.75, 0.81, 0.75, 0.81, 0.63, 0.81, 0.63, 0.28]
X19V	80 subjects	failure	0.84, 0.82, 0.84, 0.82, 0.85, 0.69, 0.85, 0.69, -0.11]
X19V	108 subjects	failure	0.89, 0.87, 0.89, 0.87, 0.90, 0.78, 0.90, 0.78, 0.03]

[bclenet]

Correlation results without sub-050, excluded by the team

Team	Number of subjects	Test status	Correlation values
X19V	107 subjects	failure	[0.89, 0.87, 0.89, 0.87, 0.90, 0.79, 0.90, 0.79, 0.21]