[E3B6] Pipeline reproduction (SPM - deriv)

[youennmerel]

Softwares

SPM 12 ; v7487 < -- for subject and group GLMs

Input data

derivatives (fMRIprep)

Additional context

Link to shared analysis code : https://doi.org/10.5281/zenodo.3518407 Code repo : https://github.com/Remi-Gau/NARPS_CPPL/tree/v0.0.2

List of tasks

Please tick the boxes below once the corresponding task is finished. :+1:

• [x] :ok_hand: A maintainer of the project approved the issue, by assigning a :checkered_flag:status: ready for dev label to it.
• [x] :deciduous_tree: Create a branch on your fork to start the reproduction.
• [x] :sunrise: Create a file team_{team_id}.py inside the narps_open/pipelines/ directory. You can use a file inside narps_open/pipelines/templates as a template if needed.
• [x] :inbox_tray: Create a pull request as soon as you completed the previous task : see #160
• [ ] :brain: Write the code for the pipeline, using Nipype and the file architecture described in docs/pipelines.md.
• [ ] :blue_book: Make sure your code is documented enough.
• [ ] :snake: Make sure your code is explicit and conforms with PEP8.
• [ ] :microscope: Create tests for your pipeline. You can use files in tests/pipelines/test_team_* as examples.
• [ ] :microscope: Make sure your code passes all the tests you created (see docs/testing.md).

[cmaumet]

@youennmerel: I am adding you as assignee on this issue (just for the time of the hackathon) so that we can more easily see which pipelines are open for new contributions in https://github.com/orgs/Inria-Empenn/projects/1/views/1

[youennmerel]

• Template template_spm.py has been used to initiate team_E3B6.py
• For now, only the following functions can be considered functional
  • __init__
  • get_preprocessing
  • get_run_level_analysis