Update MetadataPreservation

InsightSoftwareConsortium / GetYourBrainTogether

Get Your Brain Together Neuroimage Registration Workshops and Hackathons

https://insightsoftwareconsortium.github.io/GetYourBrainTogether/

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Update MetadataPreservation #24

Closed dzenanz closed 2 years ago

dzenanz commented 2 years ago

[ ] Update requirements.txt to use ITK 5.3 RC4, once it is tagged and wheels are available.
[x] link to slicer.org/wiki/Coordinate_systems and take 1 or 2 images from it and add to orient notebook
[x] exercise based on reorient all images into consistent orientation cell (add anatomical orientation label, let them choose the axis code)
[x] do super-sampling exercise (only a few missing lines)
[x] link to c++ example (just print spatial metadata)
[x] local installation instructions

dzenanz commented 2 years ago

image.spacing == image['spacing'] pip install --pre --upgrade itk ITK_COORDINATE_ORIENTATION_LPS -> LPI link to https://www.slicer.org/wiki/Coordinate_systems and take 1 or 2 images from it and add to orient notebook

exercise based on reorient all images into consistent orientation cell (add anatomical orientation label, let them choose the axis code) do super-sampling exercise (only a few missing lines)

link to c++ example (just print spatial metadata)

remove link to fMost meterials

bus schedule -> KWSdiscourse

local installation instructions

dzenanz commented 2 years ago

image.spacing produces an AttributeError: 'itkImageSS3' object has no attribute 'spacing'. bus every 15 minutes Some things done in ea68db452c9f3ac31896068a9737388abc565fe5.

Outstanding TODOs added to issue description.