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InsightSoftwareConsortium / ITK

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
https://itk.org
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Error in importing SimpleITK installed via miniconda #4474

Closed ms-hashemi closed 6 months ago

ms-hashemi commented 6 months ago

Description

SimpleITK fails to be imported in Python. The package has been installed through miniconda on Win64 system.

Steps to Reproduce

import SimpleITK Traceback (most recent call last): File "", line 1, in File "C:\ProgramData\miniconda3\envs\mytorch\Lib\site-packages\SimpleITK__init__.py", line 18, in from SimpleITK.SimpleITK import * File "C:\ProgramData\miniconda3\envs\mytorch\Lib\site-packages\SimpleITK\SimpleITK.py", line 13, in from . import _SimpleITK ImportError: DLL load failed while importing _SimpleITK: The specified module could not be found.

Actual behavior

Error in importing

Reproducibility

Always

Versions

simpleitk-2.2.1-py311h67644cf_1

Environment

Win 11, x64, packages in my miniconda environment:

packages in environment at C:\ProgramData\miniconda3\envs\mytorch:

#

Name Version Build Channel

abseil-cpp 20230802.0 h5da7b33_2 absl-py 2.1.0 pyhd8ed1ab_0 conda-forge aiohttp 3.9.3 py311ha68e1ae_0 conda-forge aiosignal 1.3.1 pyhd8ed1ab_0 conda-forge attrs 23.2.0 pyh71513ae_0 conda-forge blas 1.0 mkl blinker 1.7.0 pyhd8ed1ab_0 conda-forge bottleneck 1.3.7 py311hd7041d2_0 brotli-python 1.0.9 py311hd77b12b_7 bzip2 1.0.8 he774522_0 c-ares 1.26.0 hcfcfb64_0 conda-forge ca-certificates 2024.2.2 h56e8100_0 conda-forge cached-property 1.5.2 py_0 cachetools 5.3.2 pyhd8ed1ab_0 conda-forge certifi 2024.2.2 py311haa95532_0 cffi 1.16.0 py311h2bbff1b_0 charset-normalizer 2.0.4 pyhd3eb1b0_0 click 8.1.7 win_pyh7428d3b_0 conda-forge colorama 0.4.6 py311haa95532_0 contextlib2 21.6.0 py311haa95532_0 cryptography 41.0.3 py311h89fc84f_0 cuda-cccl 12.3.101 0 nvidia cuda-cudart 12.1.105 0 nvidia cuda-cudart-dev 12.1.105 0 nvidia cuda-cupti 12.1.105 0 nvidia cuda-libraries 12.1.0 0 nvidia cuda-libraries-dev 12.1.0 0 nvidia cuda-nvrtc 12.1.105 0 nvidia cuda-nvrtc-dev 12.1.105 0 nvidia cuda-nvtx 12.1.105 0 nvidia cuda-opencl 12.3.101 0 nvidia cuda-opencl-dev 12.3.101 0 nvidia cuda-profiler-api 12.3.101 0 nvidia cuda-runtime 12.1.0 0 nvidia eigen 3.4.0 h91493d7_0 conda-forge fftw 3.3.10 nompi_h38027f0_108 conda-forge filelock 3.13.1 py311haa95532_0 freetype 2.12.1 ha860e81_0 frozenlist 1.4.1 py311ha68e1ae_0 conda-forge giflib 5.2.1 h8cc25b3_3 gmpy2 2.1.2 py311h7f96b67_0 google-auth 2.28.0 pyhca7485f_0 conda-forge google-auth-oauthlib 1.2.0 pyhd8ed1ab_0 conda-forge grpc-cpp 1.48.2 h6772dbd_4 grpcio 1.48.2 py311h6772dbd_4 gtest 1.14.0 h91493d7_1 conda-forge h5py 3.8.0 nompi_py311h3a26632_100 conda-forge hdf5 1.12.2 nompi_h57737ce_101 conda-forge icc_rt 2022.1.0 h6049295_2 idna 3.4 py311haa95532_0 importlib-metadata 7.0.1 pyha770c72_0 conda-forge intel-openmp 2023.1.0 h59b6b97_46320 jinja2 3.1.2 py311haa95532_0 jpeg 9e h2bbff1b_1 lerc 3.0 hd77b12b_0 libaec 1.1.2 h63175ca_1 conda-forge libboost 1.82.0 h3399ecb_2 libboost-python 1.82.0 py311h12feb9d_6 conda-forge libcublas 12.1.0.26 0 nvidia libcublas-dev 12.1.0.26 0 nvidia libcufft 11.0.2.4 0 nvidia libcufft-dev 11.0.2.4 0 nvidia libcurand 10.3.4.101 0 nvidia libcurand-dev 10.3.4.101 0 nvidia libcurl 8.5.0 h86230a5_0 libcusolver 11.4.4.55 0 nvidia libcusolver-dev 11.4.4.55 0 nvidia libcusparse 12.0.2.55 0 nvidia libcusparse-dev 12.0.2.55 0 nvidia libdeflate 1.17 h2bbff1b_1 libffi 3.4.4 hd77b12b_0 libitk 5.3.0 h6e1890f_0 conda-forge libjpeg-turbo 2.0.0 h196d8e1_0 libnpp 12.0.2.50 0 nvidia libnpp-dev 12.0.2.50 0 nvidia libnvjitlink 12.1.105 0 nvidia libnvjitlink-dev 12.1.105 0 nvidia libnvjpeg 12.1.1.14 0 nvidia libnvjpeg-dev 12.1.1.14 0 nvidia libpng 1.6.39 h8cc25b3_0 libprotobuf 3.20.3 h23ce68f_0 libssh2 1.10.0 he2ea4bf_2 libtiff 4.4.0 h8a3f274_2 libuv 1.44.2 h2bbff1b_0 libwebp 1.3.2 hbc33d0d_0 libwebp-base 1.3.2 h2bbff1b_0 libzlib 1.2.13 hcfcfb64_5 conda-forge lz4-c 1.9.4 h2bbff1b_0 markdown 3.5.2 pyhd8ed1ab_0 conda-forge markupsafe 2.1.1 py311h2bbff1b_0 medpy 0.4.0 py311h9ea8ea8_6 conda-forge mkl 2023.1.0 h6b88ed4_46358 mkl-service 2.4.0 py311h2bbff1b_1 mkl_fft 1.3.8 py311h2bbff1b_0 mkl_random 1.2.4 py311h59b6b97_0 ml-collections 0.1.1 pyhd8ed1ab_0 conda-forge mpc 1.1.0 h7edee0f_1 mpfr 4.0.2 h62dcd97_1 mpir 3.0.0 hec2e145_1 mpmath 1.3.0 py311haa95532_0 multidict 6.0.5 py311ha68e1ae_0 conda-forge networkx 3.1 py311haa95532_0 numexpr 2.8.7 py311h1fcbade_0 numpy 1.26.2 py311hdab7c0b_0 numpy-base 1.26.2 py311hd01c5d8_0 oauthlib 3.2.2 pyhd8ed1ab_0 conda-forge openjpeg 2.4.0 h4fc8c34_0 openssl 3.2.1 hcfcfb64_0 conda-forge pandas 2.1.4 py311hf62ec03_0 pillow 10.0.1 py311h045eedc_0 pip 23.3.1 py311haa95532_0 protobuf 3.20.3 py311hd77b12b_0 pyasn1 0.5.1 pyhd8ed1ab_0 conda-forge pyasn1-modules 0.3.0 pyhd8ed1ab_0 conda-forge pycparser 2.21 pyhd3eb1b0_0 pyjwt 2.8.0 pyhd8ed1ab_1 conda-forge pyopenssl 23.2.0 py311haa95532_0 pysocks 1.7.1 py311haa95532_0 python 3.11.5 he1021f5_0 python-dateutil 2.8.2 pyhd3eb1b0_0 python-tzdata 2023.3 pyhd3eb1b0_0 python_abi 3.11 2_cp311 conda-forge pytorch 2.1.1 py3.11_cuda12.1_cudnn8_0 pytorch pytorch-cuda 12.1 hde6ce7c_5 pytorch pytorch-mutex 1.0 cuda pytorch pytz 2023.3.post1 py311haa95532_0 pyu2f 0.1.5 pyhd8ed1ab_0 conda-forge pyyaml 6.0.1 py311h2bbff1b_0 re2 2022.04.01 h0e60522_0 conda-forge requests 2.31.0 py311haa95532_0 requests-oauthlib 1.3.1 pyhd8ed1ab_0 conda-forge rsa 4.9 pyhd8ed1ab_0 conda-forge scipy 1.11.4 py311hc1ccb85_0 setuptools 68.0.0 py311haa95532_0 simpleitk 2.2.1 py311h67644cf_1 conda-forge six 1.16.0 pyhd3eb1b0_1 sqlite 3.41.2 h2bbff1b_0 sympy 1.12 py311haa95532_0 tbb 2021.8.0 h59b6b97_0 tensorboard 2.15.2 pyhd8ed1ab_0 conda-forge tensorboard-data-server 0.7.0 py311h1ea47a8_1 conda-forge tensorboardx 2.2 pyhd3eb1b0_0 tk 8.6.12 h2bbff1b_0 torchaudio 2.1.1 pypi_0 pypi torchvision 0.16.1 pypi_0 pypi tqdm 4.65.0 py311h746a85d_0 typing_extensions 4.7.1 py311haa95532_0 tzdata 2023c h04d1e81_0 ucrt 10.0.22621.0 h57928b3_0 conda-forge urllib3 1.26.18 py311haa95532_0 vc 14.2 h21ff451_1 vc14_runtime 14.38.33130 h82b7239_18 conda-forge vs2015_runtime 14.38.33130 hcb4865c_18 conda-forge werkzeug 3.0.1 pyhd8ed1ab_0 conda-forge wheel 0.41.2 py311haa95532_0 win_inet_pton 1.1.0 py311haa95532_0 xz 5.4.2 h8cc25b3_0 yaml 0.2.5 he774522_0 yarl 1.9.4 py311ha68e1ae_0 conda-forge zipp 3.17.0 pyhd8ed1ab_0 conda-forge zlib 1.2.13 hcfcfb64_5 conda-forge zstd 1.5.5 hd43e919_0

Additional Information

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blowekamp commented 6 months ago

Cross posted: https://github.com/niaid/tomojs-pytools/blob/master/notebooks/Neuroglancer.ipynb