Input 3D image format support

[meghalD]

I tried to read .obj file both as mesh and voxels. but the code image = itk.imread(input) is unable to read the file. It throws an error : reader = TemplateReaderType.New(*kwargs) File "/home/anaconda3/envs/Pose/lib/python3.6/site-packages/itkTemplate.py", line 471, in New return self._NewImageReader(itk.ImageFileReader, False, 'FileName', args, **kwargs) File "/home/anaconda3/envs/Pose/lib/python3.6/site-packages/itkTemplate.py", line 538, in _NewImageReader raise RuntimeError("Could not create IO object for reading file %s" % inputFileName + msg) RuntimeError: Could not create IO object for reading file 01.obj

what exactly should be the input and output so as to convert mesh or voxel 3D object to skeleton.

[T4mmi]

Hi @meghalD , thanks for using our tool !

it seems that the error is related to the ITK image reader and not to our plugin. Since i'm not used to .obj I might not be a great help here ...

[meghalD]

what is the format normally taken as input in 3D image ?Please specify so that I can find a work around to feed that as an input.

[T4mmi]

There is no "default" format for images.

ITKTickness3D will work with any ITK 3D image object as defined by ITK. If you wanna read an image file (i.e. load a file inside ITK), then you should look at the ITK ImageIO doc:

• ImageFileReader
• Read an Image
• Read an unknown image format

All I know is that natively is works with 3D TIFF (bigtiff supported) and with DICOM series (using dicom series reader)...

[meghalD]

This has to be done seperately in C++? Can I use this functions in python ?

[T4mmi]

Nope, no need for C++.
You can use almost all these functions through the Python wrappings