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Institut-Necker-Enfants-Malades / scRNA_Seq

BD Rhapsody™ Single-Cell Analysis
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Upload/Download fastq files in SB platform #1

Open HubINEM opened 6 months ago

HubINEM commented 6 months ago

Upload fastq files

To upload a large data files, the command line is recommanded by SenvenBrigdes. The command is following :

sb [global-parameters] upload <upload-subcommand> [command-parameters]
# The upload-subcommand :
sb upload start # Start the upload job
sb upload status    # Check the upload status
sb upload resume    # Resume the upload job

Start uploading files with the following command :

sb [global-parameters] upload start [<input> | --manifest-file <manifest-file>] --destination <path> [command-parameters]
# Example :
sb upload start Data/GCTACGCT_S1_R1_L001.fastq.gz Data/GCTACGCT_S1_R2_L001.fastq.gz --destination barber/barbara-pancreatic-cell-ide --tag uploadfastq

Download

sb download --file 6622655c4e49be2c240f34cc/ --destination /Users/lamine/INEM