Adding values to BiologicalSample_Nature

InstitutNationalduCancer / OSIRIS_Clinique

Clinical part for the Data Conceptual Model

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Adding values to BiologicalSample_Nature #7

Open juguerin opened 3 years ago

juguerin commented 3 years ago

We need additional values in the value set of BiologicalSample_Nature:

Saliva (UMLS:C0036087)
Urine (UMLS:C0042036)
Serum (UMLS:C0229671)
Circulating Tumor-Derived DNA (UMLS:C3827014)
Xenograft (UMLS:C0522537)

ylaizet commented 3 years ago

It's ok for me to add those values

ChristopheKETTERLE commented 3 years ago

Ok pour ajouter ces valeurs

ChristopheKETTERLE commented 3 years ago

Valeurs de BiologicalSample_Nature ajoutées dans ConceptualDomain.tsv (lignes 243-246; Urine déjà présente ligne 242) UMLS:C0036087 Saliva NCI Enumerated String OSIRIS:SampleNature UMLS:C0229671 Serum NCI Enumerated String OSIRIS:SampleNature UMLS:C3827014 Circulating Tumor-Derived DNA NCI Enumerated String OSIRIS:SampleNature UMLS:C0522537 Xenograft NCI Enumerated String OSIRIS:SampleNature

nriss commented 3 years ago

Also added on FHIR IG https://github.com/arkhn/arkhn-ig-osiris/pull/15

kcourtet commented 2 years ago

For the OSIRIS Lung project, I found these other values that would be good to add in the model :

LCR (Liquide céphalo rachidien) / Cerebrospinal FLuid -> UMLS:C0007806
Liquide pleural / Pleural Fluid -> UMLS:C0225778

MaelleBaillet5 commented 1 year ago

We add these 2 codes in the FHIR IG. We have detected a 3rd one in OSIRIS Lung files that does not exist in the FHIR IG: C2827484. Should we also add it? If yes, what is the label of this code?