Add modular structure so that users can specify which subset of validation comparisons they want to see run (e.g., include vectors? include interventions?)

[YeChen-IDM]

Design details as Dec 7th 2022:

1. Change in the data:

We are going to add a column "validation_subset" to the simulation_coordinator.csv file to organize individual sites to different subsets. Here is how the column will look like:

The subset names are dummy names which we will discourse the read names later.

2. Change at execution

I am going to update our code so that when use run the snakemake command, they have a way to choose which subset or list of subsets to run. Currently I am leaning towards adding the subsets as a snakemake config which has a default value to all sites and can be override by user at run time as: snakemake --config s='subset_1, subset_5' -j Note that the subset name should be non-case-sensitive.

3. Change in plotting and report:

TBD

[YeChen-IDM]

Change is in #53. Closed as resolved.