First development branch integration

Integrative-Transcriptomics / tss-prediction-comparison

This repository includes the tool for the prediction, comparison and visualization of TSS predicted using RNAseq. The results are then compared to provide an overview and also single-detailed visualizations.

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First development branch integration #36

Closed mwittep closed 2 months ago

mwittep commented 4 months ago

Description

Before continuing with the individual branches separated from back-end and front-end, we need a branch that joins both of them before merging gets more complicated. This development branch should then be the base of further branches.

Acceptance

Please describe what is necessary for this ticket to count as resolved. You do not need to repeat the definition-of-done that your team has agreed on generally.

[x] The code of both main branches is available in the branch
[x] No merge conflicts
[x] The app (backend and frontend servers) is started using one command only.

mwittep commented 4 months ago

There is a way of starting vite and flask all just via vite. I recommend looking at TSSpredators Web Package.json (https://github.com/Integrative-Transcriptomics/TSSpredator-GUI/blob/main/package.json), the scripts "server" and "start" provide a similar call as the ones used here. This can be combined into a function tsspredictor, jsut as in tsspredator it is combined as tsspredator.

Julian-Borbeck commented 3 months ago

Done. The server can be launched using npm-run-all using yarn. After the installation of the required backend and frontend packages, the server can be started with yarn start

Julian-Borbeck commented 3 months ago

Documented how to setup and run server https://github.com/Integrative-Transcriptomics/tss-prediction-comparison/wiki/How-to-set-up-the-server-on-your-device